Gene detail information of Glyur000007s00002857.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G57790.1 | 2.00E-78 | F-box family protein |
| NR | XP_003554440.1 | 0 | PREDICTED: F-box/kelch-repeat protein At1g57790-like [Glycine max] |
| Swissprot | tr|Q9FVS1|FBK23_ARATH | 5.00E-101 | F-box/kelch-repeat protein At1g57790 |
| trEMBL | tr|I1NAP1|I1NAP1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G38070.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00007 | 500946 | 505136 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000007s00002857.1 | PF12937.2 | F-box-like | 37 | 72 | 1.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.461 |
| SRR1783600 | control | 16.526 |
| SRR1783602 | moderate drought stress | 17.760 |
| SRR1811619 | moderate drought stress | 18.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 43.624 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 43.821 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 51.032 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 50.219 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 62.910 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 62.387 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.053 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.207 |
| SRR2868004 | Drought Stress (root) | 28.288 |
| SRR2967015 | Control (root) | 28.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 46.843 |
| SRR9715740 | Leaf | 31.279 |
| SRR9715741 | Leaf | 39.039 |
| SRR9715739 | Root | 85.218 |
| SRR9715742 | Root | 110.584 |
| SRR9715743 | Root | 111.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 76.231 |
| SRR8749028 | MeJA induced 9h | 85.365 |
| SRR8749029 | MeJA induced 9h | 77.154 |
| SRR8749030 | Uninduced | 53.010 |
| SRR8749031 | Uninduced | 45.709 |
| SRR8749032 | Uninduced | 44.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.577 |
| SRR8400027 | Control - Root | 28.279 |