Gene detail information of Glyur000007s00002853 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22400.1 | 2.00E-118 | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain |
| NR | XP_007162918.1 | 0 | hypothetical protein PHAVU_001G191300g [Phaseolus vulgaris] |
| Swissprot | tr|Q9FMR1|RGAP1_ARATH | 1.00E-156 | Rho GTPase-activating protein 1 |
| trEMBL | tr|V7CXK1|V7CXK1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW34912.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00007 | 478490 | 483165 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000007s00002853.1 | PF00786.23 | PBD | 98 | 133 | 7.00E-10 |
| Glyur000007s00002853.1 | PF00620.22 | RhoGAP | 161 | 296 | 9.10E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.630 |
| SRR1783600 | control | 11.666 |
| SRR1783602 | moderate drought stress | 14.246 |
| SRR1811619 | moderate drought stress | 14.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.729 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.192 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.425 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.844 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.963 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.737 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.518 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.368 |
| SRR2868004 | Drought Stress (root) | 36.069 |
| SRR2967015 | Control (root) | 36.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.384 |
| SRR9715740 | Leaf | 15.751 |
| SRR9715741 | Leaf | 15.897 |
| SRR9715739 | Root | 10.374 |
| SRR9715742 | Root | 24.580 |
| SRR9715743 | Root | 24.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.739 |
| SRR8749028 | MeJA induced 9h | 7.041 |
| SRR8749029 | MeJA induced 9h | 7.239 |
| SRR8749030 | Uninduced | 7.278 |
| SRR8749031 | Uninduced | 6.398 |
| SRR8749032 | Uninduced | 5.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.507 |
| SRR8400027 | Control - Root | 38.268 |