Gene detail information of Glyur000007s00002852 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G23930.1 | 1.00E-37 | probable small nuclear ribonucleoprotein G |
| NR | XP_003625846.1 | 9.88E-49 | hypothetical protein MTR_7g104930 [Medicago truncatula] |
| COG | YP_023499.1 | 5.00E-08 | snRNP Sm-like protein [Picrophilus torridus DSM 9790] |
| Swissprot | tr|O82221|RUXG_ARATH | 2.00E-48 | Probable small nuclear ribonucleoprotein G |
| trEMBL | tr|Q2HTF4|Q2HTF4_MEDTR | 4.00E-49 | Small nuclear ribonucleoprotein {ECO:0000313|EMBL:AES82064.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00007 | 473988 | 475203 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000007s00002852.1 | PF01423.17 | LSM | 9 | 71 | 4.40E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.620 |
| SRR1783600 | control | 9.850 |
| SRR1783602 | moderate drought stress | 9.275 |
| SRR1811619 | moderate drought stress | 9.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 73.689 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 72.532 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 59.248 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 58.207 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.720 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 39.390 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 43.057 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 42.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 157.401 |
| SRR2868004 | Drought Stress (root) | 131.019 |
| SRR2967015 | Control (root) | 116.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 79.951 |
| SRR9715740 | Leaf | 93.777 |
| SRR9715741 | Leaf | 85.512 |
| SRR9715739 | Root | 107.037 |
| SRR9715742 | Root | 62.836 |
| SRR9715743 | Root | 63.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 140.435 |
| SRR8749028 | MeJA induced 9h | 69.557 |
| SRR8749029 | MeJA induced 9h | 120.247 |
| SRR8749030 | Uninduced | 46.061 |
| SRR8749031 | Uninduced | 56.100 |
| SRR8749032 | Uninduced | 50.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 94.322 |
| SRR8400027 | Control - Root | 90.103 |