Gene detail information of Glyur000007s00002833.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11540.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | NP_001267512.1 | 0 | probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] |
| COG | YP_007206315.1 | 4.00E-144 | O-linked N-acetylglucosamine transferase, SPINDLY family [Singulisphaera acidiphila DSM 18658] |
| Swissprot | tr|O82039|SPY_PETHY | 0 | Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY |
| trEMBL | tr|I1JGL8|I1JGL8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G36210.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00007 | 366829 | 377187 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT41 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000007s00002833.1 | PF13414.1 | TPR_11 | 49 | 108 | 1.90E-06 |
| Glyur000007s00002833.1 | PF00515.23 | TPR_1 | 111 | 144 | 3.70E-05 |
| Glyur000007s00002833.1 | PF13414.1 | TPR_11 | 152 | 212 | 1.00E-09 |
| Glyur000007s00002833.1 | PF00515.23 | TPR_1 | 220 | 253 | 3.80E-09 |
| Glyur000007s00002833.1 | PF00515.23 | TPR_1 | 295 | 328 | 8.10E-06 |
| Glyur000007s00002833.1 | PF13414.1 | TPR_11 | 329 | 394 | 6.60E-13 |
| Glyur000007s00002833.1 | PF00515.23 | TPR_1 | 397 | 429 | 5.70E-09 |
| Glyur000007s00002833.1 | PF13844.1 | Glyco_transf_41 | 483 | 633 | 1.10E-24 |
| Glyur000007s00002833.1 | PF13844.1 | Glyco_transf_41 | 652 | 841 | 1.20E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.931 |
| SRR1783600 | control | 33.141 |
| SRR1783602 | moderate drought stress | 39.816 |
| SRR1811619 | moderate drought stress | 40.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.890 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.577 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 44.562 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 43.100 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.094 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.015 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.975 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.232 |
| SRR2868004 | Drought Stress (root) | 60.537 |
| SRR2967015 | Control (root) | 62.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 27.126 |
| SRR9715740 | Leaf | 29.738 |
| SRR9715741 | Leaf | 38.132 |
| SRR9715739 | Root | 11.171 |
| SRR9715742 | Root | 29.663 |
| SRR9715743 | Root | 26.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.063 |
| SRR8749028 | MeJA induced 9h | 48.155 |
| SRR8749029 | MeJA induced 9h | 35.117 |
| SRR8749030 | Uninduced | 30.218 |
| SRR8749031 | Uninduced | 20.000 |
| SRR8749032 | Uninduced | 22.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 49.823 |
| SRR8400027 | Control - Root | 44.787 |