Gene detail

Gene detail information of Glyur000007s00002828

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06210.1	6.00E-35	RNA binding (RRM/RBD/RNP motifs) family protein
NR	AFK39402.1	2.43E-70	unknown [Medicago truncatula]
COG	YP_003525756.1	1.00E-20	RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc 4]
Swissprot	tr\|Q9LIS2\|RBG4_ARATH	2.00E-25	Glycine-rich RNA-binding protein 4, mitochondrial (Precursor)
trEMBL	tr\|I3SGL0\|I3SGL0_MEDTR	9.00E-71	Uncharacterized protein {ECO:0000313\|EMBL:AFK39402.1}

Sequence

Transcript Sequence

>Glyur000007s00002828.1
AATTTATTCATAAATAATTGAAAATTTACTTTATCCCACAAAATAAATTGTTCGACACGAGTGAAGGTAAATTCGTGGCAGGCCAGCCCACGTTAGGGTTGGGCTTTTGATGTATGTTGAAGTGGAAGCCTTTTCACGGCCATGACTAATGTCAGTGAGCACTGAGCAGAGCACCCTAGTGTAGTTAGTGCCTTGCTTTGTTCCCTTTGTCTCTGCGAGACGCGAATTACATTTCCATGGCGGGGGCGGCCATCAGAAGAATAGTAATTGGCTCCAATAAACCCTTCTCTTCACCATCTCTTCTCACTTTCCGCAGGGCAATTGCTTTCAAGCTTTTCGTTGGAGGACTGTCCTTTCACACGACAGAGAAAACATTGTCAGATGCATTCTCCAATTACGGACAAGTTGTTGAAGCTAAAGTTGTAACAGATAGGGTGTCAGAAAGATCAAAAGGGTTTGGGTTTGTCACTTTTGCTTCACAAGATGAGGCTGAGAATGCCATAACAGAGATGAATGGAAAGGCACTAAATGGGCGTGTTATCTTTGTTGATTATGCAAAACCCGATACCAAAACTGGTTTTGGAATGCCAATTGCCAGAGGACCACCTGAAGACCTGAACCAACAACAGAAGACAGTTGATTCCCCCTAGGCCATGTGAGATTATGATATTTAACATACTGGAGCAAGCCATGTGTTGAAAATAGCAAGAGTTTTTCTTTCATCAGCTCTTGCTTGCATACGGAGAAATGAGTTTTTTTTTAGGTTTTATAGATCCATACAAGTATTAGAAGCATTGGTCAGTGATAACTGAAGGATTTATTTATGTACAAGGGAAAAAAAACTCCTCTAAGCAAGCTTGTATCTAAAATGAGAAGTGTAGTCTACTCATCTTCAGATTTTTGTGGGTTAAGATTTTGATGCACTTTAAATTGAGTCAATGGTGAATATGGTAGTCTTATTTACTCACTTTAGAGAGAATCTCACATTAAATGAGACTTATCTGTGTAGTAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00007	338146	339988	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000007s00002828.1	PF00076.17	RRM_1	33	102	2.50E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.566
SRR1783600	control	7.671
SRR1783602	moderate drought stress	8.347
SRR1811619	moderate drought stress	8.252

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.185
DRR006520	Root Summer glycyrrhizin high producing strain	19.143
DRR006521	Root Winter glycyrrhizin high producing strain	12.434
DRR006522	Root Winter glycyrrhizin high producing strain	12.389
DRR006523	Root Summer glycyrrhizin low producing strain	18.141
DRR006524	Root Summer glycyrrhizin low producing strain	18.272
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.697
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.726

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.619
SRR2868004	Drought Stress (root)	8.793
SRR2967015	Control (root)	8.463

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.347
SRR9715740	Leaf	9.938
SRR9715741	Leaf	5.097
SRR9715739	Root	7.093
SRR9715742	Root	7.527
SRR9715743	Root	8.018

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.596
SRR8749028	MeJA induced 9h	10.197
SRR8749029	MeJA induced 9h	14.267
SRR8749030	Uninduced	2.110
SRR8749031	Uninduced	0.151
SRR8749032	Uninduced	2.130

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.193
SRR8400027	Control - Root	10.086