Gene detail

Gene detail information of Glyur000007s00002812

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47140.1	7.00E-59	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004494228.1	1.07E-146	PREDICTED: momilactone A synthase-like [Cicer arietinum]
COG	YP_006346221.1	3.00E-49	dehydrogenase [Mesotoga prima MesG1.Ag.4.2]
Swissprot	tr\|Q94KL7\|SILD_FORIN	1.00E-118	Secoisolariciresinol dehydrogenase (Fragment)
trEMBL	tr\|V7CXT3\|V7CXT3_PHAVU	4.00E-144	Uncharacterized protein {ECO:0000313\|EMBL:ESW34939.1}

Sequence

Transcript Sequence

>Glyur000007s00002812.1
CATTGGCCGTCTGGCAAATACCNCTATGCCTCTAAACTAATAATAAAATACGAGTACTGACTTTGGCCTACTTCATCACCGGTCACGAGCTATTAATTAAGCTTGTTTCTAATCTCGCATTTTAACGTATTGTTCTTCGTCTCTCCCNTTCACTTTTTTTTCACATAGGTCATACCATGGCAAGTTCAACCTCTGCAGTTAACAGAAGTGGCATTGGAAAGCGCACTGCAGAAATATTCGCGCAGCATGGAGCCAAAGTAGTGATCGCTGACATCCAAGATGAANTGGGACATTCCGTTGCTCAATCCATAGGACCATCTACGTGTTTATACGTCCACTGCGATGTCACCGATGAGAACCAAGTCAAAAACGCTGTGGACACGACCGTACAAACATACGGGAAGCTAGACATCATGTTCAACAACGCCGGCATAGGTGGGCCCAATGAATCCCGAATCATTGACAACGAAAAGGAAGATTTCGAGCGTGTACTCAGTGTCAATGTGACAGGTGTTTTCCTATGCATTAAGCACGCGACACAAGCCATGATCCCAGCTCGTAACGGTAGCATTATCAACACGGCTAGCATAAGCTCTTACGTTGGTGGTGCTGCCTCACATGCGTATTGTTGTGCTAAGCATGCCGTCGTTGGTCTAACTAAAAATGCTGCAGTTGAGCTTGGACAATTTGGGATCAGGGTGAATTGCTTGTCGCCTTATGCTTGTGCCACTCCTTTGGCCACAAAGTTTGTTGGATGTAGTGATGAGGAGCTTGAGAATAACATGAACTCGCTGGCTAATCTCAAGGGGGTGACCTTTAAAACTGACGATGTGGCAAATGCGGCACTTTATTTTGCTAGTGATGATTCAAGGTACGTGAGTGGCCATAATTTGCTCATAGATGGGGGGTTCAGCATTGTTAATCCCTCATTTCGAATACTAGAAGGAAAAGTGGCACTCATAACCGGAGGAGCGAGTGGAATTGGAAAACGCACTATAGAAATATTCACTCAGCATGGAGCCAAGGTAGTAATTNCTGACATCCAAGACGAAATAGGAAATTCTGTTGCTCAATCCATAGGACCATCTACATCTGCATACATCCATTGCGATGTCGCTGATGAGAACCAAGTGAAAAATGCGGTGGACAAAACCGTACAAACATACGGGAAACTAGACATCATGTTCAACAATGCTGGCACAACTGATCCCAACAAATCCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00007	261885	267934	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000007s00002812.1	PF13561.1	adh_short_C2	8	246	8.70E-29
Glyur000007s00002812.1	PF00106.20	adh_short	258	344	1.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.156
SRR1783600	control	30.475
SRR1783602	moderate drought stress	32.192
SRR1811619	moderate drought stress	32.113

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.202
DRR006520	Root Summer glycyrrhizin high producing strain	32.397
DRR006521	Root Winter glycyrrhizin high producing strain	33.727
DRR006522	Root Winter glycyrrhizin high producing strain	33.294
DRR006523	Root Summer glycyrrhizin low producing strain	46.046
DRR006524	Root Summer glycyrrhizin low producing strain	44.557
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.122
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.975

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	148.613
SRR2868004	Drought Stress (root)	115.913
SRR2967015	Control (root)	92.923

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.373
SRR9715740	Leaf	0.758
SRR9715741	Leaf	3.854
SRR9715739	Root	78.016
SRR9715742	Root	44.237
SRR9715743	Root	52.604

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.538
SRR8749028	MeJA induced 9h	51.798
SRR8749029	MeJA induced 9h	35.560
SRR8749030	Uninduced	46.805
SRR8749031	Uninduced	45.472
SRR8749032	Uninduced	50.553

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.301
SRR8400027	Control - Root	32.355