Gene detail information of Glyur000007s00002810 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47140.1 | 4.00E-57 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_003554452.1 | 6.42E-131 | PREDICTED: secoisolariciresinol dehydrogenase [Glycine max] |
| COG | YP_555868.1 | 2.00E-48 | putative short-chain dehydrogenase/reductase [Burkholderia xenovorans LB400] |
| Swissprot | tr|Q94KL7|SILD_FORIN | 1.00E-115 | Secoisolariciresinol dehydrogenase (Fragment) |
| trEMBL | tr|V7CXT3|V7CXT3_PHAVU | 1.00E-129 | Uncharacterized protein {ECO:0000313|EMBL:ESW34939.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00007 | 259179 | 261259 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000007s00002810.1 | PF13561.1 | adh_short_C2 | 31 | 258 | 1.40E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.868 |
| SRR1783600 | control | 0.922 |
| SRR1783602 | moderate drought stress | 2.653 |
| SRR1811619 | moderate drought stress | 2.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.130 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.032 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.268 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.261 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.265 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.217 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.223 |
| SRR2868004 | Drought Stress (root) | 0.929 |
| SRR2967015 | Control (root) | 0.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 62.717 |
| SRR9715740 | Leaf | 5.191 |
| SRR9715741 | Leaf | 14.556 |
| SRR9715739 | Root | 2.378 |
| SRR9715742 | Root | 3.004 |
| SRR9715743 | Root | 2.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.404 |
| SRR8749028 | MeJA induced 9h | 0.362 |
| SRR8749029 | MeJA induced 9h | 0.178 |
| SRR8749030 | Uninduced | 0.443 |
| SRR8749031 | Uninduced | 0.199 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.754 |
| SRR8400027 | Control - Root | 3.993 |