Gene detail

Gene detail information of Glyur000007s00002809

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06260.1	1.00E-155	TLD-domain containing nucleolar protein
NR	KEH24187.1	0	TLD-domain nucleolar protein [Medicago truncatula]
trEMBL	tr\|A0A072U385\|A0A072U385_MEDTR	0	TLD-domain nucleolar protein {ECO:0000313\|EMBL:KEH24187.1}

Sequence

Transcript Sequence

>Glyur000007s00002809.1
AACAAAACTTGGCAGAACCACGAACCCTGGTCCCCAAATAACAGGAACACAGAATTGGAACATTCGAAGCGAAGCAAAGCAAAGCAAAGCAATGGGCAATGCTCAGTCTCCTCCCAGTGATCCTCGTTATGTTTCAGCATCCAGAGCTTTTAGTCCAAAGGAACTAGAAGACTTGAGGTCCCTGTTCAATTCTCTCGCAGCTCAATCACAGAGCAATGACAAGTACATCTCTCCCTCCGTTTTTCAGTCATATTTTAAACTCCGTGGCCCTGTTGGGGAGAGGATGTTTGATTTAGCTACTCAGGAGCGCAAGGATCAAAAGTTAACCTTTGAAGACCTCGTTGTTACTAAAGCTACTTATGAGAAAGGAACAAAAGACGATATTGAAGAATTCATCTTTCGCTTATTAGATGTTTCAGGAGACAATTTTGTAGGGAGGTCTGATTTGGAATCTGTCATGAATGCCATTTTTAATGATATATTATGCATAGAAGGTTCTGAAGATAGATCAAGTTCACATCAAGACATTGTCAACATATTTCTGAATGCTGCAAATTTCTCCATGCATGACGAAGGGTGCAGTGAGGAGACTATGTCTTTTGAAGATTTCAGAAGTTGGTGTACTCATCTCCCAACTGTGAGGAAGCTTCTTGGAAGCTTGCTTTTGCCACCTGATTCAGGACGACCAGGTTCTCAAATTCCTAAACTATCGACTCCAAAGGATATTGATTCTAACATTTTACTTTTGAGAAAGGAATATGCTTGGCATATAGGGGGAGCACTTTCTCAGCATGAGCTGGAAGATTGGAAGCTTTTGTATCATAGTGCTGTTAATGGTCTTAGTTTCAATACATTTTTGGGCAACATTTCAAATCATGAAGGCCCAACTGTGTTAATTATTAAGGATAAAGAGGGATACATATATGGAGGATATGCTTCTCAACCATGGGAGCGGCATGCTGAATTTTATGGAGACATGAAATGTTACATTTTTCAACTAAACCCAAAGGCATCTATATTCAGGCCGAGTGGAGCAAACAGTAATCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGGCGAGTCAATCACTTCGGGTTGTTTCTCTCTGCGAACTTCGATCAAGGGAACACATTTTCATGTTCCACATTTGGTAGCCCTTGCCTCTCCAAAACTAACCGTATATTGCCAGAAGTAATAGAGTGCTGGGGAGTGACTCAAGGTGCGGCACAAGCCAAGAATGATGCGGTGAAGGGCACTATACTGGAGAGGTTTAAGGAGGATCGGCATATGCTCAATATGGTAGGGCTAGCAAATTCCAGCGAGTAAATTAATGTCAATATACCATGAGAAAACAACTTTTTTTTTTATGTAACAGTAACTCTGTTAGTTAAATAACATTTTGGGGAAGCATTTTTTCGCAGAATAGTTTTTAGTTTATTCTAAATGAAAGGATCATTGTAATATATAAATTTATAACATACATGTACTGGTCAAGGAGTGTTAGCTNAGTTGGTAGAGCTTAGCATTTATAGTGTTTGATATCCGAGTTCAAATCTCCATCCTAGAAAAATATAATATATATGTATATGTATTTCGAACATCATAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00007	254765	258714	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000007s00002809.1	PF07534.11	TLD	241	384	4.30E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.099
SRR1783600	control	10.106
SRR1783602	moderate drought stress	9.208
SRR1811619	moderate drought stress	9.323

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.204
DRR006520	Root Summer glycyrrhizin high producing strain	13.230
DRR006521	Root Winter glycyrrhizin high producing strain	13.577
DRR006522	Root Winter glycyrrhizin high producing strain	13.454
DRR006523	Root Summer glycyrrhizin low producing strain	11.136
DRR006524	Root Summer glycyrrhizin low producing strain	11.566
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.825
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.618

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.763
SRR2868004	Drought Stress (root)	14.861
SRR2967015	Control (root)	15.393

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.108
SRR9715740	Leaf	10.411
SRR9715741	Leaf	10.031
SRR9715739	Root	1.058
SRR9715742	Root	6.621
SRR9715743	Root	4.995

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.596
SRR8749028	MeJA induced 9h	5.046
SRR8749029	MeJA induced 9h	5.811
SRR8749030	Uninduced	3.196
SRR8749031	Uninduced	1.023
SRR8749032	Uninduced	0.704

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.340
SRR8400027	Control - Root	18.357