Gene detail

Gene detail information of Glyur000007s00002791

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52500.1	7.00E-147	Eukaryotic aspartyl protease family protein
NR	KEH24212.1	0	eukaryotic aspartyl protease family protein [Medicago truncatula]
Swissprot	tr\|Q766C2\|NEP2_NEPGR	2.00E-42	Aspartic proteinase nepenthesin-2 (Precursor)
trEMBL	tr\|A0A072U3B0\|A0A072U3B0_MEDTR	0	Eukaryotic aspartyl protease family protein {ECO:0000313\|EMBL:KEH24212.1}

Sequence

Transcript Sequence

>Glyur000007s00002791.1
ATGGCCTATCCTTACATTCTCTTTGTTACACTCTCTCTCCTCTCACTCGCTTCTTCCAACCCCGACACCACCATTACCCTTTCTCTTTCCCCCTTGAAATTCACCAAATCCCCATCCTCAGATCTATTTCAGACCCTTAAATTCGCAGCCTCTGCTTCTCTAACCAGAGCTCACCACCTCAAAACCCGCAAACCAAAATCGAGNCACGCCACTTCTTCTCCTTCTTCCCTCGTAGACACACCAGTTTTCTCCAAAAGCTACGGTGGGTACTCCATAGATCTCAATTTCGGAACCCCACCTCAACCCTCTTCCTTCGTATTGGACACAGGAAGNAGCCTCCTCTGGCTCCCCTGTTCCTCTCGCTACCTCTGTTCCCGTTGCAACTTCCCAAACATCGACTCAACAAAAATCCCAACCTTTATCCCCAAAAACTCTTCCACCTCCAAGCTCCTCGGTTGCACTAACCCCAAATGCGGGTTGCTNTTCGGCAACGACGTTCAATCTCGATGCCATGGATGCAAAATCGGAAATTCTCAGAACAACTGTAGTACCCAAACTTGCCCTGCTTACATTGTTCAGTACGGTTTGGGTTCCACCGCCGGTTTCTTACTGTTNGAGAATCTCCACTTTCCGGCGAAAACAGTGACCGATTTCCTCGTCGGTTGCTCCATCCTCTCTATTCGTCAACCCTCCGGGATCGCCGGGTTCGGTCGCGGCCCTGAGTCGCTTCCGTCGCAAATGGGTCTTAAAAAATTCTCCTACTGCTTGCTCTCTCACAATTTCGACGACTCGCCGGAGAGCAGCGATCTCATCTTGCAGACCGGCTCCACCGGCGATTCCAAGACAAACGGACTCAGCTACACGCCGTTTCGAAAAAACCCGTCGGGGAGCAACGCCGCATTCCGCGAGTACTACTATTTGACCCTCCGAAGCGTNGTCGTCGGCGGCGAGAGGGTGAAGATTCCGTTCGAGTTCCTGGTGCCCGGACCCGACGGCAATGGCGGCACCATCGNGGACTCTGGCTCCACGTTCACCTTCATGGAGAGGCCCGTGTTCGATTTGGTGGCGCGAGAGTTCGAGAAGCAACTGGGGAATTTCACGAGAGCAAAAGACATTGAGGCACAAACCGGTTTGCGCCCCTGTTTCGATTTCTCAGGCATCAAAACGGTGCCGTTCCCGGAGTTGACTTTTCAGTTTAAAGGCGGTGCCAAAATGACGTTGCCCGTTTCGAATTACTTCTCTCTGATCGGAGACTCCGAGGTCGCGTGTTTGACCATTGTCTCCGACGGGGTCTCCGGCCCGGAGAGAAATGGCGGTCCGGCGATCATACTGGGAAATTATCAGCAACAGAATTTCTACGTTGAATATGATTTGGAAAACGATAGGTTCGGATTTCGGCCTCAGAGTTGCCAAAAGAATGCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00007	155152	156576	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000007s00002791.1	PF14543.1	TAXi_N	90	269	1.60E-27
Glyur000007s00002791.1	PF14541.1	TAXi_C	304	467	1.70E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.851
SRR1783600	control	47.018
SRR1783602	moderate drought stress	15.406
SRR1811619	moderate drought stress	15.267

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.337
DRR006520	Root Summer glycyrrhizin high producing strain	27.439
DRR006521	Root Winter glycyrrhizin high producing strain	0.196
DRR006522	Root Winter glycyrrhizin high producing strain	0.229
DRR006523	Root Summer glycyrrhizin low producing strain	10.385
DRR006524	Root Summer glycyrrhizin low producing strain	10.523
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.992
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.812

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.857
SRR2868004	Drought Stress (root)	20.953
SRR2967015	Control (root)	26.483

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.226
SRR9715740	Leaf	2.511
SRR9715741	Leaf	6.160
SRR9715739	Root	50.088
SRR9715742	Root	49.240
SRR9715743	Root	46.622

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.956
SRR8749028	MeJA induced 9h	15.146
SRR8749029	MeJA induced 9h	10.339
SRR8749030	Uninduced	1.730
SRR8749031	Uninduced	0.461
SRR8749032	Uninduced	1.130

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.232
SRR8400027	Control - Root	65.683