Gene detail

Gene detail information of Glyur000007s00002788

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G35980.1	2.00E-35	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
NR	XP_004494244.1	8.47E-97	PREDICTED: uncharacterized protein At1g08160-like [Cicer arietinum]
Swissprot	tr\|Q9SJ52\|YLS9_ARATH	8.00E-53	Protein YLS9
trEMBL	tr\|A0A072U3C0\|A0A072U3C0_MEDTR	8.00E-95	Harpin-induced-like protein {ECO:0000313\|EMBL:KEH24222.1}

Sequence

Transcript Sequence

>Glyur000007s00002788.1
ATGGCCCTGCCATTCCACCGGCGGAGCAACCCCGCTACCGCCACAACCACCGCGGAAGAAGCTGTTATTCTAATTGCACTCATCGTGCTCGTCGGCCTCGCGATCCTCATCTTCTGGCTGGTGGTACAACCCCGCTCGTTCAAGTTCCACGTGACGGAGGCCAAGCTAACCCAATTCGACTACACCAACGACACCCTACGCTACAACATGGTGCTCAACTTCACGGCCCGGAACCCAAACAAGAAGCTCAGCATCTACTACGACAAAGTGGAGGCCCGGGCTTTCTACGAGGACTCAAGGTTCGACAGTGTCGATGTGATCACACACATGAACTCGTTCCGCCAGTACACAAAGAGAACCGACCCCATGAGCGGTGTTTTCTCCGGGCAGCATGTGATGGTGCTCGACAGTGACCAGGTCTCTGAGTTTAACAAAGACAAGAGTGATGGGGTTTATGACATCTATGTGAAGCTCTACTTCAGGATTAGGTTCAGGCTTGGTGACTTGATATCTGGCAAATACAAGCCTAAGGTCAAATGTGAGCTCAGGATTCCATTGAGTGCTAACAATGCCACCACTACCCTCACTCGGTTTGAGCCCACCAAGTGCGATCCCCAGTTGAACGGAGCCTACTACGGCCCTTTTTTTTCGCCACCGAAATCGTCCCACCGGCCAGGGCGTGGCGTTTTTTTTGCCGGGTGCCTCTGCGGCTGCCTCTTCAGCCTAATCTTTTTTTTCATCCTCACCATCGTGATCATCGTGGGGATCGCGGTGTTCCTGTTCTGGCTGATCGTGCGCCCCAACGTGGTGAAGGTTCACGTGACCGACGCCACCCTCACCCAATTCAACTACACCAGCGACGGCATGCTCCACTACAACATGGCCCTCAACATCACCAGGCTCGGAATCTACTACGACTACATCGAAGCGCGTGCACTGTACCAGGATGCCAGGTTTCACTCCGATTTCCTCGACTTTTTTTTTCAGGGCCACAAGAACACCAGCGAATTGAACCCTGTTTTTTTTTGTCAACAGGCCATAGCACTGGGCGCTGACCAGACTTTTTTTTTTAACAAGGAGAAGACCTCTGGGGTTTACGACATCGATTTTTTTTTGTACCTGAAGGTGAGGTTCAAGTTGGGTGTGNTCAATTTTTTTTCGCTCAAGCCCAAGGTCCACTGTGACCTCCGCGTTCTTTTTTTTTCTTCCGGTGGTGCCTTTCAGACCACCAAGTGCGACTTTTTTTTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00007	140733	148091	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000007s00002788.1	PF03168.8	LEA_2	74	180	7.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.576
SRR1783600	control	4.152
SRR1783602	moderate drought stress	4.646
SRR1811619	moderate drought stress	4.589

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.734
DRR006520	Root Summer glycyrrhizin high producing strain	37.577
DRR006521	Root Winter glycyrrhizin high producing strain	71.071
DRR006522	Root Winter glycyrrhizin high producing strain	67.052
DRR006523	Root Summer glycyrrhizin low producing strain	111.614
DRR006524	Root Summer glycyrrhizin low producing strain	103.495
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.620
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.843

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.069
SRR2868004	Drought Stress (root)	87.669
SRR2967015	Control (root)	183.293

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	127.005
SRR9715740	Leaf	70.257
SRR9715741	Leaf	154.681
SRR9715739	Root	235.315
SRR9715742	Root	111.841
SRR9715743	Root	131.955

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	684.926
SRR8749028	MeJA induced 9h	709.225
SRR8749029	MeJA induced 9h	999.163
SRR8749030	Uninduced	1224.935
SRR8749031	Uninduced	836.094
SRR8749032	Uninduced	917.429

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.420
SRR8400027	Control - Root	24.015