Gene detail

Gene detail information of Glyur000007s00002778.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01820.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_004494248.1	0	PREDICTED: probable receptor protein kinase TMK1-like [Cicer arietinum]
COG	YP_004775215.1	1.00E-23	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|P43298\|TMK1_ARATH	0	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|A0A072U3D4\|A0A072U3D4_MEDTR	0	Receptor-kinase-like protein {ECO:0000313\|EMBL:KEH24239.1}

Sequence

Transcript Sequence

>Glyur000007s00002778.1
GTTACTACCATAACTGGGGAATTGCGACGAATTCCTCAAAAGCCAACCCTCACCGAACCGAAAGCCTTCTCATTCCCCCACCTTAATTTCCGTCTTTGAATCCAACACTCCCAAACAGACGCAGGGTTTTCTCTTCTTCTCAGATTCGACATGCGCTGTTGTTGTNGTCGTTGCCCCTTCGCATTTCATCAAACACAAACACTCCCTCTTCATCACTCTCTCAGATGAACATTTACAACCGCCATGTTCATGGACGCTTCTTCTTCTGGAATGTTCCTTTGGACTCTCCTCCTTCTCTTACCCACCACACTGGTCCTCAGCGCCACCGACCCAAACGACGTGAAAATCCTGAACCAGTTCAGAAAGGGTCTCGACAACCCTGAACTGTTACCGTGGCCCGAAGAAGGTGGCGACCCATGTGGGACCCCACTCTGGAAATACATCTTCTGCGACGGTGACAGGGTGTCACAGATTCAAGCCAAGAACTTGAACCTCACCGGTCCCTTACCCCAGAATCTGAACCAACTCACCGAGCTCTCAAACCTAGGACTCCAGAACAACAACCTCAACGGTCCNTTACCATCGCTCAGCGGCTTGTCGAAGCTCAAATACGCGTTCCTCGACAACAACAACTTCGATTCAATCCCTGATGGTTTCTTCAACGGGTTATCGAGCTTGGAGGTTATGGCATTGGATAACAACAACCTCAACGCCACTAGTACCAGTGGTGGGTGGAATTTCCCTTCTTCCTTGAAGGATTCTCCACAGTTGACGAACCTCTCTTGTATGAGTTGCAACTTGGTGGGTCCCTTACCGGATTTCCTCGGCGAGATGAACTCGCTTTCGTTTTTGAAGCTTTCCGGGAACAATTTGACCGGTCAGATCCCGGCGAGTCTCAACGGCTCCGGCTTGCAGGCTCTGTGGCTGAATAACCAGAAAGGTGAAGGGCTCACTGGGGAAATTGGTGTTGTGGCCACCATGGCTTCTCTAACGAGCCTTTGGCTTCATGGGAATCGGTTCACCGGTTCGATTCCGGCGGAAATTGGAGACTTNGCTTCTCTTAAGGATCTCAACCTCAATGGTAATGATCTCGTTGGGCTTATNCCTGATGCTTTAGGTAACATGGAATTGGACAACCTTGATTTGAACAATAACAAGTTGATGGGTCCGATCCCAAATTTCAAAGCAACTAAAGTCTCTTATAGTAACAATGATTTTTGTCAGAACAAAACTGGGGTTCCCTGCGCTTTTGAGGTTATGGCGCTTTTGGAGTTCCTTGGTGGGTTGAATTACCCTTCGAATCTAGTTGATTCATGGAATGGTAATGACCCTTGTGAGGGTCCTTGGTTGGGGATAAAGTGCAATGGTGAGGGGAAGGTGTCTATGATTAATTTGCAACACTTTAATCTTAATGGTACTCTGAGTCCTTCTGTTGCAAACTTGGGTTCTCTTGTTGAAATCAGATTGGGGGGTAACAATCTCAGTGGTGTAGTACCTAGTAACTGGACTAGCTTAGCGTCTCTGAAATTGTTGGATCTGAGTGGTAATAATATTTCTCCTCCACTGCCAGTGTTTAGTAATGGATTGAAACCTATGGTTGATGGGAATCCTCTTTTAAATGGAGGCGGTGGTTCGGAGGCTCCATCTTCCGGGAAAAACAGCCCATCAGCTGGATCTGGGAATGCTGAACCTACACCAGCACACTCAAATTCAAATTCAAGTGAATCTCATGAGACGAAAAAATCCAATAAGAAAGGCTTGGTTTTGATTGTAGCCCCTATTGCAGGTTTGGCGGCTGCAGCTTTTCTGTTGGTTCCACTTTATGCATATTGTTTCAGGAGGAGAAAGGATGGTTTCCAAGCTCCAAGTTCACTAGTAATTCACCCCAGAGATCCATCTGATTCATCAGACAGTACCATAAAGATTGCTGTTGCTAATAATACCAATGGAAGCATTTCCACTGTGGCAGGGANTGGGACTGGGAGTAGAAACAGCAGTGGGATTGGGGACTCTCATGTCATTGAAGCTGGAAATCTTGTGATATCAGTTCAAGTTCTAAGAAACGTGACCAAGAATTTCGCCCCCGAGAATGAGCTTGGCCGTGGTGGATTNGGGGTTGTTTACAAGGGAGAGTTGGATGACGGGACCAAGATTGCGGTAAAACGAATGGAAGCCGGTGTGATTAGTAGTAAAGCCTTGGATGAATTCCAGGCTGAAATTGCAGTTCTATCGAAAGTTCGACATCGGCATCTAGTGTCCCTTTTGGGTTATTCCATCGAAGGTAATGAGAGGATTCTAGTATATGAGTATATGCCACAAGGGGCTCTCAGTAAGCATCTTTTCCATTGGAAGAGTTCTGGTTTGGAGCCCCTCTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTNGCTAGAGGAATGGAGTATCTNCATACTCTGGCTCACCAGAGCTTCATTCACAGAGATCTCAAGTCCTCAAATATTTTGCTTGCTGATGATTATAGAGCTAAAGTTTCAGACTTTGGATTGGTAAAACTTGCTCCTGAAGGCGAAAAATCTGTAGTGACCCGGCTTGCTGGGACCTTTGGATACTTGGCTCCAGAATATGCAGTGACAGGAAAAATCACTACCAAAGCAGATGTTTTCAGTTTTGGGGTTGTGCTAATGGAGCTGTTGACTGGATTGATGGCACTTGATGAGGACAGACCTGAGGAAACCCAATACCTGGCAGCATGGTTCTGGCATATAAAATCAGATAAGAAGAAACTGATGGCTGCAATTGACCCAGCCCTTGACATAAAGGAAGAAACGTTTGAGAGTGTCTCCATGATCGCTGAGCTAGCCGGACACTGCACTGCCAGAGAACCAAGCCAACGGCCAGATATGGGTCATGCTGTGAATGTTCTGGCACCGCTTGTTGAAAAATGGAAACCATTTGATGATGACACCGAGGAGTATTCCGGCATCGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGGTGGCAGGAGGCAGAAGGAAAAGACTTGAGTTATATGGACCTAGAAGACAGTAAAAGTAGTATCCCTGCAAGACCCACTGGATTTGCAGATTCTTTTACTTCAACTGATGGCCGGTGAAACAAATGGTTTGTTGCTTGCTTTGTTGAATGTTCCCTTTTCTTTTCTTTTCCTTTCACCCTTTTTGTTTTTCTATAGGTGTAGATAGCATGCTATGCTCTCTTGTCTAAAATTGACTGGTCAAAATGTTGAGTACCAGTGGTGTTGAGTAAGAGATTTCATATGTACTTGAAATCTCATTTGTATGCTTTTGTATTTCCACTATATGTCATTGAAGTGTTAATGGTTGTAGATAGTGAGCACGATCAATGAGAATGCTTGTCATTTGTTCATTCATTTACGCCCCTCAACATTCATTGTCATATGTTGTTTGGGTATTGATAAAGATTCTGTTTTCTTTTATGAGCATAGCTTTCGGCCAACTACCTCTTTCTTTTTTTGTAAGACTTTCCTCTTCATGGACATGCATNAAAAACTGAACTGATAATGTCATCTCTGCATTTAAGGTTCCCCAAAATGTTGTGTTGGCGAATGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00007	86164	90176	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.6.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000007s00002778.1	PF08263.7	LRRNT_2	30	70	0.00043
Glyur000007s00002778.1	PF00560.28	LRR_1	199	218	0.83
Glyur000007s00002778.1	PF08263.7	LRRNT_2	339	374	1.80E-05
Glyur000007s00002778.1	PF00560.28	LRR_1	426	446	0.11
Glyur000007s00002778.1	PF00069.20	Pkinase	616	886	1.20E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.794
SRR1783600	control	49.106
SRR1783602	moderate drought stress	34.774
SRR1811619	moderate drought stress	34.469

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.055
DRR006520	Root Summer glycyrrhizin high producing strain	47.442
DRR006521	Root Winter glycyrrhizin high producing strain	3.314
DRR006522	Root Winter glycyrrhizin high producing strain	3.265
DRR006523	Root Summer glycyrrhizin low producing strain	29.707
DRR006524	Root Summer glycyrrhizin low producing strain	29.551
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.330
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.249

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.393
SRR2868004	Drought Stress (root)	48.558
SRR2967015	Control (root)	44.406

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.538
SRR9715740	Leaf	7.251
SRR9715741	Leaf	10.207
SRR9715739	Root	71.108
SRR9715742	Root	48.293
SRR9715743	Root	53.236

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.071
SRR8749028	MeJA induced 9h	2.398
SRR8749029	MeJA induced 9h	1.303
SRR8749030	Uninduced	0.601
SRR8749031	Uninduced	0.117
SRR8749032	Uninduced	0.361

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	64.745
SRR8400027	Control - Root	78.953