Gene detail information of Glyur000006s00001720 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18570.1 | 6.00E-120 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004505134.1 | 0 | PREDICTED: protein CHUP1, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q9LI74|CHUP1_ARATH | 1.00E-101 | Protein CHUP1, chloroplastic |
| trEMBL | tr|G7JPN9|G7JPN9_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AES90314.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00006 | 703263 | 706970 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.266 |
| SRR1783600 | control | 1.290 |
| SRR1783602 | moderate drought stress | 1.246 |
| SRR1811619 | moderate drought stress | 1.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.373 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.342 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.048 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.047 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.388 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.337 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.839 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.157 |
| SRR2868004 | Drought Stress (root) | 3.402 |
| SRR2967015 | Control (root) | 5.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.616 |
| SRR9715740 | Leaf | 0.139 |
| SRR9715741 | Leaf | 1.390 |
| SRR9715739 | Root | 2.195 |
| SRR9715742 | Root | 1.049 |
| SRR9715743 | Root | 1.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.301 |
| SRR8749028 | MeJA induced 9h | 1.740 |
| SRR8749029 | MeJA induced 9h | 2.107 |
| SRR8749030 | Uninduced | 0.110 |
| SRR8749031 | Uninduced | 0.001 |
| SRR8749032 | Uninduced | 0.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.474 |
| SRR8400027 | Control - Root | 5.484 |