Gene detail information of Glyur000006s00001717 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G34070.1 | 3.00E-130 | TRICHOME BIREFRINGENCE-LIKE 37 |
| NR | XP_003608110.1 | 0 | hypothetical protein MTR_4g087730 [Medicago truncatula] |
| Swissprot | tr|Q8VY22|TBL38_ARATH | 5.00E-162 | Protein trichome birefringence-like 38 |
| trEMBL | tr|G7JPN2|G7JPN2_MEDTR | 0 | Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein {ECO:0000313|EMBL:AES90307.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00006 | 692977 | 696093 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000006s00001717.1 | PF14416.1 | PMR5N | 43 | 96 | 1.20E-22 |
| Glyur000006s00001717.1 | PF13839.1 | PC-Esterase | 97 | 350 | 9.60E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.316 |
| SRR1783600 | control | 0.339 |
| SRR1783602 | moderate drought stress | 0.303 |
| SRR1811619 | moderate drought stress | 0.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.101 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.128 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.084 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 59.900 |
| SRR2868004 | Drought Stress (root) | 29.388 |
| SRR2967015 | Control (root) | 29.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.407 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.188 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.149 |
| SRR9715743 | Root | 0.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.398 |
| SRR8749028 | MeJA induced 9h | 0.891 |
| SRR8749029 | MeJA induced 9h | 4.733 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.655 |
| SRR8400027 | Control - Root | 2.826 |