Gene detail

Gene detail information of Glyur000006s00001711

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G25500.1	2.00E-169	formin homology 1
NR	XP_006583848.1	0	PREDICTED: formin-like protein 2-like [Glycine max]
Swissprot	tr\|Q8S0F0\|FH1_ORYSJ	0	Formin-like protein 1 (Precursor)
trEMBL	tr\|I1KLT8\|I1KLT8_SOYBN	0	Formin-like protein {ECO:0000256\|RuleBase:RU361260}

Sequence

Transcript Sequence

>Glyur000006s00001711.1
ATGCCCACCACCTTAGCCACACTCCTATTGTTGTCACTTGTTTCAACAAGTGCTTTCTCCGGTACCGTTCAACACCATAACCGCCGTGTCCTCCACCAACCACTGTTTCCTAGAATATCTGTGCCTCCAGTACAACCACCGTCTTCTTCAGTTTCTTCTCCTGAAGCACAGCCCAAACCGCAAAAACAACAACCCAAGCTTCCNTTTTCTTCATCCTCCAACTCTTCACCCTCCTCCTCTTCTTCTTCCCCACAAAAACCTTTCTTCCCTTCCTACCACACCCCACCACTCCCTCCTTCCCCAACCGTCGTCGCCACATTCCCCGCCAACATCTCCTCCCTACTCCTCCCCCGAACCTACACCCACCACAACCACCGCCCCGCCGCTGCAGTCGCCGTCTCACTCTCCCTCCTGACCCTCGCCCTCCTCGCCGCCTCCGCCGCCTTCGCCTACCACCGCCGCCGTGGCACCCAAGCCGCCTCCACTTCCACCGCCGTCGATGACAAGGCCTCGGGATCAGACAGTCTCCGCCTGTTCCCGCCAAACACCGTAACCTCCGACGGCGGCGACCGGAAACCCCGCGGAAGGTCGAGCCCGACGGAGGCGCTCTACCTCGGCACGGTGGCAGCAGGCTCCGAGGACGCAAGAGGAGCCGCGGAGTCAAGCTGCAGCGGCAATGGCGGTATTCGGCAACCGTACCGGAAGCTCGGAGACTCGCCGGAGCTNAATCCTCTGCCTCCGTTGCCACGTCACAATTTCAGGGCATGGACGAGTGAAGAGAAGAAGGAAGAAGAGGAAGACGAGGAGGAGTTTTATTCTCCAAAAGGGTCTTCTTCTGGGAACAAAGAACATAGTCCTCCTNCTTCTTCTTCTTCACCCATTGCTGCTGCTGCTGTTGTTGCTGCATCGAGCTCTCGCACACTCAGTGTATTCCACTTGGATAAATTTGGTAGCAGAAGCTTCACTTCAAGAACCCCATCTTACCCTCGTTCCAACAACTCCCTCTCTCGTTCACCTTCTCTGAATCTCAGCCCCGGAAGCGCCAAATCGTTGCCCCCTCCCAACCCTGCATCATCGTCCCCACCTTTCTCTTCTTCCTCTTCTTCTCCGAAGCCGAGGGAGGACCTGAGTTCCAATTCTCAGAAGCCGACCAAGTTTCCCCCTTCACCGCCACCGCCGCCGCCNCCGCCGCGGTTTTGGGAGACTCCGGTAGTAGCTGAACCGTCGCAAAATGCTAATGTTGGTGCTGTCAGGAATGAGAATGAGGACACCCCAAAGCCAAAGTTGAAGGCTTTACATTGGGATAAAGTTAAGGCCAGCTCCGACAGGGCCATGGTTTGGGATCGCTTGAGACCAAGCTCTTTCCAATTGAACGAGGACATGATTGAGTCACTTTTTATGGTGAATAGTTCTAATGGAAGTTCTGCTAATTTGGGTCTTGGAGACAATGCGCGGCGTCAAATAATTCATCCTTCTTCTGTGCCACCGGAAAATAGGGTGCTTGATCCTAAGAAGTCTCAGAACATTGCCATTTTGCTCCGGGCACTAAATGTTACTATTGATGAAGTCTGTGAGGCTCTCAGGGAAGGTAATTGTGATACATTGGGAACGGAACTTTTGGAAAGTTTATTAAAGATGGCTCCAACCAAAGATGAGGAATCTAAGCTGAAGGAGTTTCAGGATGTATTGCCCTTCAAGCTTGGCCCAGCTGAGAAATTTCTTAAAGTCATGCTTGATATACCTTTTGCATTCAAGAGAGTGGATGCTATGCTCTACATTGCTAATTTTGATTCAGAATTAGAATACCTTAAGAAGTCCTTTGAAACTCTGGAGGTGGCTTGTGTGGAACTAAGGAATAGCAGAATGTTTTTGAAGATACTTGAGGCAGTGCTGAGAACAGGAAATCGAATGAATGTTGGCACCAATCGTGGTGATGCACATGCATTCAAACTGGACACACTTTTGAAGTTGGTTGATATTAAGGGAACCGACGGAAAGACTACCCTCTTACATTTTGTTGTACAGGAAATTGTCAGAACCGAGGGTTCTCATATATCCGGTGCTAATCATCAGCAGCACGCCCCTGACAACATGCAGCAATATACTCTTCAAGATGAGGTTGATTTCAGGAAGCTTGGACTGCAAGTTGTTTCAGGCTTGAGTGGGGAGCTCACCAATGTCAAAAAGGCAGCTGCTATGGATTCGGACATGCTCAGTAGCGATGTTGCTAAACTCGCCAGAGGAATCGAAAAGGTTGTGCAAGTTGTGAAATTGAATGAAGAGTTGCCTCTGAAGGAAACCAACCCGAAATTCTCCGAGGCAATGAAAGGTTTTTTGGAGAGGGGGGAGGAGATTTCAAGAATCCAGGAGCAAGAGAAAAACGCTCTCTCTTCGGTAAAGGAGATAACTGAGTACTTCCACGGGAATTCGGCAAAGGAAGAAGCTCACCCGTTTAGGATCTTCATGGTTGTGAGGGATTTCCTTTCAATACTAGATGGTGTATGCAAGGAAGTTGGGAAAGCAAATGAGAGGACTTTAGTTGGTTCCCGTCAATATGCAATGCCTACAAACATTACACTGCCAGCAATTTTCCCTGAGATTATTGGTAAGCAGCCATCTGATGATTCCTCAGAATCTGATTAACCTCCCAGTTGTGCTACAATTTGAATTAGTTCATACATGCTTGGTCGTAGATGGGGTTAGATTTTTACCATCCAAGCATTACCATGTGAGATCACATCTTCCACTCAAATCAGACTGAACACAAGCCAAGCTTACCCCTCTACATCTGGATGAGGAGAAGCTCATGCTATCAAAGCACTTGTGTTTTGTGCCTTAAATTACTCTGTATATGTTTTACTGCCTAGATTTTATAGTAAGTTGAGTATATTTTCGCCCCTCTTTTTTCTGGGTTAAGTGGGCTGCTTCTCTGTATTGTATTCATACAAATGATCTGTGACAGGAATTTTGGATTTGTTTTTCTAATCTTTAATGTAAATTGAGAATTGTGATTTGTGTGTAAAAAAGGTAACACGGTAGTTGTGCGCATGATANAAGTCATTAGTTTGTACTTTGTGGAAGGTCTTTTAATTGCTCGTGCCCCCCCTGCAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	661844	666442	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001711.1	PF02181.18	FH2	421	831	1.80E-116

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.683
SRR1783600	control	48.245
SRR1783602	moderate drought stress	53.039
SRR1811619	moderate drought stress	56.550

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	94.663
DRR006520	Root Summer glycyrrhizin high producing strain	90.668
DRR006521	Root Winter glycyrrhizin high producing strain	0.107
DRR006522	Root Winter glycyrrhizin high producing strain	0.122
DRR006523	Root Summer glycyrrhizin low producing strain	29.074
DRR006524	Root Summer glycyrrhizin low producing strain	29.874
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.829
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.914

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.681
SRR2868004	Drought Stress (root)	2.738
SRR2967015	Control (root)	3.196

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.859
SRR9715740	Leaf	3.432
SRR9715741	Leaf	1.596
SRR9715739	Root	36.767
SRR9715742	Root	26.568
SRR9715743	Root	25.663

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.564
SRR8749028	MeJA induced 9h	0.130
SRR8749029	MeJA induced 9h	0.234
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.055

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.847
SRR8400027	Control - Root	47.998