Gene detail

Gene detail information of Glyur000006s00001706

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10460.1	2.00E-116	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_003608097.1	0	hypothetical protein MTR_4g087590 [Medicago truncatula]
COG	YP_005032670.1	2.00E-55	putative sugar phosphatase (HAD superfamily) [Azospirillum brasilense Sp245]
trEMBL	tr\|G7JNP6\|G7JNP6_MEDTR	0	HAD-family hydrolase IIA {ECO:0000313\|EMBL:AES90294.1}

Sequence

Transcript Sequence

>Glyur000006s00001706.1
AAAAGAAATAATGAATATTTTTCATTTGAACGGGAAAAAAATTGTACAAGCGAGATTGTGGGAAATGAATAATAGATCGGATGTAAAGGACNAAGGAAGGAGCGAAGCAGACAGAATGATTCCCAAATGCTCTGTTCCGAGTCGGCCACTTCAGTTTCAGAGCTTGAATGGTCTCCGAAAACTCGCCGAAACGCGTCGTTTCAAGGTATGGTTGTTGGATCAGTTCGGAGTCCTCCATGATGGGAAACAACCTTATCCTGCTGCCATTTCAACATTAGAAAACATAGCAAAGACGGGTGCTAAGATGGTGATCATAAGCAACTCCTCGAGACGCTCATCGGTGACTATTGAAAAAGTCAAAAGTCTTGGCTTTGATGCCTCTCTCTTTGTGGGAGCCATCACCAGTGGAGAACTCACCCATCACTACTTACAAAGGAGAGATGATCCTTGGTTTGCAGCATTGGGAAGGTCTTGTATTCATTTCACCTGGAGTGGCCGGGGAGCAATATCCCTTGAGGGCTTGGACTTGAAAGTTGTGGAGAATGTTGAAGAAGCTGAGTTTGTTTTGGCTCATGGGACTGAAGCCTTGGGGGAAGCCAATGGGAATGCACGTTCAGTGAAACTTGAAGACCTTGAGAAAATATTGGAGCTTTGTGCTGCAAAAAGGATTCCTATGGTGGTAGCCAATCCCGATTATGTAACCGTTGAAGCAAGAGACTTGCGTGTGATGCCCGGTACACTAGCAGCTAAATATGAAGAGCTTGGGGGTGAAGTGAAATGGATGGGCAAACCTGATGAGATAATCTACAAGTCAGCAATGGCCATGGCTGGCACCGATGCTTCTGACTGTGTTGCTGTGGGTGATTCTCTCCATCATGATATCAAGGGTGCTAATGCTGCTGGAATCGAATCAATTCTTATCACTGGTGGGATTCATGCAACTGAACTTGGACTCCATGGTTTTGGAGAATTTGCAAATATGTCTTCTGTGCAATCGCTTGCAACGAAATATGATGCTTATCCATCTTATGTGTTGCCCGCATTCACTTGGTAGAACAACATGGCAAGGAATCCGAACCACCACAATCATAATTGTAATGTTTTATTTAAGCATTTCTATGATTTATTGTCCTTTGTACAAAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	638677	641495	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001706.1	PF13344.1	Hydrolase_6	67	145	4.60E-14
Glyur000006s00001706.1	PF13242.1	Hydrolase_like	258	312	3.50E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.398
SRR1783600	control	9.520
SRR1783602	moderate drought stress	7.038
SRR1811619	moderate drought stress	6.562

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.988
DRR006520	Root Summer glycyrrhizin high producing strain	11.612
DRR006521	Root Winter glycyrrhizin high producing strain	4.785
DRR006522	Root Winter glycyrrhizin high producing strain	4.555
DRR006523	Root Summer glycyrrhizin low producing strain	10.666
DRR006524	Root Summer glycyrrhizin low producing strain	10.221
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.153
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.017

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.426
SRR2868004	Drought Stress (root)	24.504
SRR2967015	Control (root)	21.974

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.015
SRR9715740	Leaf	24.633
SRR9715741	Leaf	26.381
SRR9715739	Root	8.553
SRR9715742	Root	6.794
SRR9715743	Root	7.570

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.004
SRR8749028	MeJA induced 9h	19.217
SRR8749029	MeJA induced 9h	20.105
SRR8749030	Uninduced	9.528
SRR8749031	Uninduced	9.239
SRR8749032	Uninduced	6.215

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.617
SRR8400027	Control - Root	28.147