Gene detail information of Glyur000006s00001701 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59710.1 | 8.00E-55 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | AES90281.2 | 9.02E-128 | short chain dehydrogenase/reductase [Medicago truncatula] |
| COG | YP_008149897.1 | 3.00E-28 | hypothetical protein SCE1572_17400 [Sorangium cellulosum So0157-2] |
| Swissprot | tr|Q9M2E2|SDR1_ARATH | 5.00E-51 | (+)-neomenthol dehydrogenase |
| trEMBL | tr|G7JNN3|G7JNN3_MEDTR | 3.00E-128 | Short chain dehydrogenase/reductase {ECO:0000313|EMBL:AES90281.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00006 | 606773 | 608307 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000006s00001701.1 | PF00106.20 | adh_short | 7 | 86 | 2.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.400 |
| SRR1783600 | control | 7.227 |
| SRR1783602 | moderate drought stress | 4.079 |
| SRR1811619 | moderate drought stress | 4.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.910 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.816 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.703 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.012 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.269 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.002 |
| SRR2868004 | Drought Stress (root) | 32.967 |
| SRR2967015 | Control (root) | 28.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.546 |
| SRR9715740 | Leaf | 0.622 |
| SRR9715741 | Leaf | 0.232 |
| SRR9715739 | Root | 5.774 |
| SRR9715742 | Root | 2.724 |
| SRR9715743 | Root | 2.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.951 |
| SRR8749028 | MeJA induced 9h | 0.885 |
| SRR8749029 | MeJA induced 9h | 7.116 |
| SRR8749030 | Uninduced | 2.016 |
| SRR8749031 | Uninduced | 1.898 |
| SRR8749032 | Uninduced | 5.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.447 |
| SRR8400027 | Control - Root | 7.383 |