Gene detail

Gene detail information of Glyur000006s00001700.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43710.1	0	Plant stearoyl-acyl-carrier-protein desaturase family protein
NR	XP_004505150.1	0	PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Cicer arietinum]
COG	YP_006369323.1	1.00E-29	Fatty acid desaturase [Modestobacter marinus]
Swissprot	tr\|Q42807\|STAD_SOYBN	0	Acyl-[acyl-carrier-protein] desaturase, chloroplastic (Precursor)
trEMBL	tr\|S5U3F4\|S5U3F4_9FABA	0	Acyl-[acyl-carrier-protein] desaturase {ECO:0000256\|RuleBase:RU000582}

Sequence

Transcript Sequence

>Glyur000006s00001700.1
CGTACCACCTCACACAGCACAGTACAGCGCAGCTCACACACATACATACATACATATCATATCATACACTCTCCTCTCTTTCTCCTCTCCTCTCCATTATATCAAATCAAACAAACAAACAAAAACAAACACTCTCTCCAATCTCTCTTCTCCTGCACTCCCACTCCACAATATAGCACACATTCAACCCTCCAATCCAACCCAACCCAACCCAACCCAACCCAACAGAGCAGAGAAGCATCACCATCAGCATAATCAATCAACAATGGCTCTGAGAATGAACCCTCTCCCCACCCAGACATACTCCTTCGCCCTTCCCCAAATGGCCAGCCTCAGATCTCCCAAGTTCGTCATGGCCTCCACCCTCCGTTCCGGTGCCAAGGAGGTTGAAAATATTAAGAAGCCTTTCACGCCTCCCAGAGAAGTGCATGTCCAAGTAACCCACTCTATGTCACCCCAGAAGATTGAGATTTTCAAATCTTTGGAGGGTTGGGCTGAGCAGAACATCTTGGTTCACCTTAAACCTGTGGAGAAATGCTGGCAACCACAGGATTTTCTGCCAGATCCTTCCACAGATGGATTTGAAGAGCAAGTGAGGGAACTGAGAGCGAGAGCAAAGGAGCTTCCAGATGATTACTTTGTTGTTCTGGTCGGAGATATGATCACTGAGGAAGCTCTCCCTACTTACCAGACAATGCTTAATACTTTGGATGGAGTTCGTGATGAAACAGGTGCCAGCCCTACTTCCTGGGCAGTTTGGACAAGGGCATGGACTGCTGAAGAAAATAGGCACGGTGATCTTCTCAACAAGTATCTTTACTTGTGTGGACGTGTTGATATGAGACAAATTGAGAAGACAATTCAGTACTTGATTGGGTCTGGAATGGATCCTCGGACTGAGAACAGCCCCTACCTTGGTTTCATTTACACTTCATTTCAAGAGAGGGCAACCTTTATATCCCACGGAAACACGGCCAGGCTTGCTAAGGAACATGGTGATATAAAGTTGGCTCAGATCTGTGGTTTGATTGCCTCGGATGAGAAACGCCATGAGACTGCCTACACAAAGATAGTGGAAAAGCTGTTTGAGATTGATCCTGATGGTACAGTTATGGCGTTTGCTGACATGATGAGGAAGAAAATTGCTATGCCAGCGCACCTGATGTATGATGGCCGAGACGACAACCTGTTCGATAACTATTCTGCCGTAGCTCAGCGCATTGGGGTCTACACTGCCAAGGACTATGCTGATATACTTGAGTTTCTGGTAGGGAGGTGGAAGGTGGGGGACCTCACTGGACTTTCAGGTGAGGGACGAAAGGCACAGGAGTACGTTTGTGGGCTGCCACCAAGAATCAGAAGGCTGGAGGAGAGGGCTCAAGGAAGAGCAAAGGAATCATCNAAACTTCGATTCAGCTGGATTCATGATAGGGAAGTACTACTCTGAACAATCCAAGGTGCATCGTGAATCTTCAAGCAATCCTATTTGGAGAAATATTGAATAGTTAAAAATCAGTTTGTCATTTTTTGTTTTGGGTCTCATGTTATGTGTCACTGTAAGGTGAAAGGAACATTTGTTCTTACTTGGTCACTAGTTATGGTTAAGCAGTTCAGGGGCCGCTGTAGTATTAGAAATGCTATTTTTTTTCCTTTTGTGGTAGTGATGTCTATCTAAGCTGACGTTCTTTTCTGGCAATTTTGGTCATAAAGAATATTTAGTTCTTCGGTGGTTTCTCAAGTGTGGGAAAAAGTTAAAGGCAATTTTGATGGCGGAGCGAACGATTTATCTTTTGCTCAAAAGTCAAAGGGATACTTAAGTTGGTGTGAGTGCCATGTTGCTATGTTATCACTTGTAAATTGGTCGGTTATATGCTATACTCCTATCTTAATATTGGTATGAGCTACATTGGTATAAAAGGTATGCTGCATCACGAGTTCGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	596798	600578	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03921	FAB2, SSI2, desA1	EC:1.14.19.2 1.14.19.11 1.14.19.26	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061
			Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

biological_process

GO:0006631 fatty acid metabolic process

GO:0006633 fatty acid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0045300 acyl-[acyl-carrier-protein] desaturase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001700.1	PF03405.9	FA_desaturase_2	64	391	1.10E-186

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	101.433
SRR1783600	control	102.035
SRR1783602	moderate drought stress	92.946
SRR1811619	moderate drought stress	92.834

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	103.379
DRR006520	Root Summer glycyrrhizin high producing strain	102.273
DRR006521	Root Winter glycyrrhizin high producing strain	48.115
DRR006522	Root Winter glycyrrhizin high producing strain	46.944
DRR006523	Root Summer glycyrrhizin low producing strain	97.333
DRR006524	Root Summer glycyrrhizin low producing strain	98.298
DRR006525	Leaf Summer glycyrrhizin high producing strain	62.274
DRR006526	Leaf Summer glycyrrhizin high producing strain	62.129

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	105.619
SRR2868004	Drought Stress (root)	64.913
SRR2967015	Control (root)	60.682

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	66.072
SRR9715740	Leaf	67.608
SRR9715741	Leaf	65.145
SRR9715739	Root	80.819
SRR9715742	Root	87.735
SRR9715743	Root	80.524

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	78.487
SRR8749028	MeJA induced 9h	32.260
SRR8749029	MeJA induced 9h	36.383
SRR8749030	Uninduced	16.654
SRR8749031	Uninduced	8.911
SRR8749032	Uninduced	14.039

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	111.075
SRR8400027	Control - Root	110.315