Gene detail information of Glyur000006s00001689 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59660.1 | 0 | C2 domain-containing protein / GRAM domain-containing protein |
| NR | XP_004505156.1 | 0 | PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Cicer arietinum] |
| Swissprot | tr|Q9ZVT9|C2GR1_ARATH | 6.00E-21 | C2 and GRAM domain-containing protein At1g03370 |
| trEMBL | tr|G7JNL7|G7JNL7_MEDTR | 0 | C2 and GRAM domain plant-like protein {ECO:0000313|EMBL:AES90265.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00006 | 544247 | 554270 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000006s00001689.1 | PF00168.25 | C2 | 85 | 163 | 1.80E-11 |
| Glyur000006s00001689.1 | PF02893.15 | GRAM | 241 | 305 | 3.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.073 |
| SRR1783600 | control | 15.973 |
| SRR1783602 | moderate drought stress | 16.906 |
| SRR1811619 | moderate drought stress | 16.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.449 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.357 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.488 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.110 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.731 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.348 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.071 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.724 |
| SRR2868004 | Drought Stress (root) | 43.080 |
| SRR2967015 | Control (root) | 36.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.050 |
| SRR9715740 | Leaf | 15.702 |
| SRR9715741 | Leaf | 29.415 |
| SRR9715739 | Root | 6.199 |
| SRR9715742 | Root | 17.761 |
| SRR9715743 | Root | 14.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.646 |
| SRR8749028 | MeJA induced 9h | 34.809 |
| SRR8749029 | MeJA induced 9h | 35.877 |
| SRR8749030 | Uninduced | 82.763 |
| SRR8749031 | Uninduced | 92.902 |
| SRR8749032 | Uninduced | 76.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.970 |
| SRR8400027 | Control - Root | 31.408 |