Gene detail

Gene detail information of Glyur000006s00001687

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05710.5	5.00E-45	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	XP_003529377.1	2.11E-108	PREDICTED: transcription factor bHLH113-like isoform X1 [Glycine max]
Swissprot	tr\|Q9LT67\|BH113_ARATH	2.00E-31	Transcription factor bHLH113
trEMBL	tr\|I1KLV7\|I1KLV7_SOYBN	8.00E-109	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G32980.1}

Sequence

Transcript Sequence

>Glyur000006s00001687.1
AATTATTGTATTATATTCATTCTAGCTTTTATAAAATGACATTTTGACATTAACCTGCTCCCCTTCCCTTCCTCTTCTTCTTCCTCCACTGAAGAGCTTCCACTACTTTTCCTTTCAAGGACTGGCACTGATTAAAGTCACAANCTTTCCAGCTTTTAGAAGATACCCACCAAAACATTTGCAGCCCCCAGTTGCTTAAACAGCACAAAGGAGAGAGGGCTTTGGTTTCATTCAAACCTTTTTTCTTCCTCCTGATTTNTGCTTCAAAGTCATAGATGATAGCCAGCTCCTTCTGCAATGCTGATTCTATGTTTTCAAGAGAAGAGGGGATAGATGTNAGAAAGATGATGGGACATAAAAGGAGCCCCTGCTCTGTTGATCAANGCAGTTATACTTCTATTGCACCTAAAAAGCAAAAGGCCGATTTATCGATCAGCTCTAAGGATAGGAAGGAAAAGTTTGGTGAACGAATTGTTACTCTTCAGCAGCTTGTTTCACCATATGGAAAGACTGATACATCTTCTGTTCTAAAGGAGGCGATGGATTACATAGGGTTCCTTCATAAACAAGTTAAGCTGCTAAGTGCTCCTTACCTCGAAACTTCACCAGCAACCACGATGCAGGGTACAGAGCCATGCAGCCTGAGGAGTAGAGGGTTATGTCTTGTTCCTGTCTCATTTACTATGGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCAATCAAGACTACTACTTCACCGAAATTCGAGAAGGATGTCTCACAATTTAATTGACAAATTTTGTCAGCTGAGCAGCCTCAAAGGTTGCCAAGTTGCCAAACCAGTCTTGAAGCATGAAAATTTCTCATCATCATCATCATGATCATACATCTAGATGGAATCATAGTAGCTAAAATTAGTTAAAAGCATTAAAAACTCTTATCAAGAAGCTGTCCCCATGCCTTTAAAATTTTAAACTGGTGATGGGGTGAAGCTTTCAAGTACGCCATATGTATCCTTAATTCCCTGTGCTGATTATAAAATGTATATTTAAAAATTCTAGTATAATGATTCCATGTACTCATTAGCTGAAATGAAAGTCGTTTCTAGATTTGATGAGGTACAAATGTCAATGTTAGGCGTTGGACTTTTTGCATCACAAGTGTAGTAGTATTAGTAGTCTTTGACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	535200	539715	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	126.932
SRR1783600	control	128.457
SRR1783602	moderate drought stress	107.197
SRR1811619	moderate drought stress	106.677

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	58.097
DRR006520	Root Summer glycyrrhizin high producing strain	57.119
DRR006521	Root Winter glycyrrhizin high producing strain	4.103
DRR006522	Root Winter glycyrrhizin high producing strain	3.947
DRR006523	Root Summer glycyrrhizin low producing strain	82.174
DRR006524	Root Summer glycyrrhizin low producing strain	82.568
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.992
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.748

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.486
SRR2868004	Drought Stress (root)	49.244
SRR2967015	Control (root)	36.966

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.738
SRR9715740	Leaf	27.614
SRR9715741	Leaf	26.202
SRR9715739	Root	48.781
SRR9715742	Root	36.707
SRR9715743	Root	37.975

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	68.237
SRR8749028	MeJA induced 9h	56.164
SRR8749029	MeJA induced 9h	47.131
SRR8749030	Uninduced	20.957
SRR8749031	Uninduced	13.231
SRR8749032	Uninduced	13.495

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	109.436
SRR8400027	Control - Root	115.598