Gene detail information of Glyur000006s00001684 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43650.1 | 4.00E-112 | Sas10/U3 ribonucleoprotein (Utp) family protein |
| NR | XP_006583862.1 | 0 | PREDICTED: something about silencing protein 10-like isoform X2 [Glycine max] |
| trEMBL | tr|K7L2Y0|K7L2Y0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G33010.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00006 | 509724 | 516668 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000006s00001684.1 | PF04000.10 | Sas10_Utp3 | 244 | 324 | 4.50E-15 |
| Glyur000006s00001684.1 | PF09368.5 | Sas10 | 607 | 681 | 5.70E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.321 |
| SRR1783600 | control | 12.424 |
| SRR1783602 | moderate drought stress | 19.255 |
| SRR1811619 | moderate drought stress | 19.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.454 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.957 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.179 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.611 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.826 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.652 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.652 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.771 |
| SRR2868004 | Drought Stress (root) | 25.790 |
| SRR2967015 | Control (root) | 24.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.178 |
| SRR9715740 | Leaf | 15.652 |
| SRR9715741 | Leaf | 14.492 |
| SRR9715739 | Root | 1.069 |
| SRR9715742 | Root | 8.143 |
| SRR9715743 | Root | 7.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 53.920 |
| SRR8749028 | MeJA induced 9h | 35.253 |
| SRR8749029 | MeJA induced 9h | 29.443 |
| SRR8749030 | Uninduced | 7.590 |
| SRR8749031 | Uninduced | 5.026 |
| SRR8749032 | Uninduced | 3.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.023 |
| SRR8400027 | Control - Root | 26.156 |