Gene detail

Gene detail information of Glyur000006s00001681

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G15900.1	Phox-associated domain;Phox-like;Sorting nexin, C-terminal
NR	XP_004505169.1	PREDICTED: uncharacterized protein LOC101513187 isoform X1 [Cicer arietinum]
trEMBL	tr\|K7L2Y3\|K7L2Y3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G33040.2}

Sequence

Transcript Sequence

>Glyur000006s00001681.1
TCGAGAACTATACGGTCGTCCTCGCCACCATATTTCTATCATTATTATTGTCACCTCATCTCCAATTCAACTTTGGGCAAGTTGGATTGGTCATTGGTGGTGCTTTAAGGAGAGGACCAANTCATGAGTCACAAAGAATATTAATATTTTAGGGTGTTCGATATCAAATTCCAGGTGTTTGTGTCGTCCCAGAAAGGAATNAAATCAAAACTGAAATCAAACCGAACACATAATAGACAAGACAAGAGAAGAGAAAGACCTAGGTTNAGGTTGTCTGTCCCTGATTGCTATCGGTGTTGTTTCAAAGTCCAAAGAAATAGTAAGGGCATGGAGAGTGTGCATGATCTGATCCAAGAGGCCAAGCTCCGCACTCTCTGGTGGGCCCTCTGTATATTCGCCGTTTCCTATTTCCTCACTCATACAAGTAAATCTATGTGGATGAATGTTCCCATGTCAATTCTATTTGTTTCCGCACTGCGCATTCTTTTCAACAAGGTGGAATTTCGTTGGAAGGTTCAAAGGCCTAGATCACAGACATATCTATCTCATTTGGAGAGAAAACAGTTGTCTCTGAATGATCCGCGTCTCTCTAGTTNGCCTCCCTCGGCAAAATGGAAGAGGAAAATTGATTCTCCTGCTGTGGAGGCTGCAATGGGTGATTTCATTGATAAGATTTTGAAGGATTTCGTGGTTGATTTGTGGTACTCAGAAATTACTCCAGACAGGGAGTTCCCTGAGCAGATACGTGCAATAATCATGGATGTTCTTGCTGAAATATCAGCAAGGGTTAAAGAGATAAACCTTGTTGACTTGCTAACAAGGGATTTAATTGATCTAATAGGTGATCACTTGGAACTTTTCAGAAGAAATCAAGCTGCTATAGGTGTTGATGTTATGAAAACATTATCTTCTGAGGAGAGGGATGACAGATTGAAATTCCATTTGTTGAATTCTAAGGAGCTTCATCCAGCCCTGATATCTCCTGAGAGTGAGTACAAGGTTCTTCAGCTGCTGATGAGTGCAGTTTTAGCTACAGTACTAAGACAACGAGAAGCACAGTGTCCTGTGATTCGCTCAATAGCACGGGAACTTTTGACTTGCTTGGTAATGCAGCCTATTATGAACTTGGCAAGCCCTGGGTATATNAATGAGCTGATTGAATCTCTTTTAATTCTCCTTAATGATGATGGTACAAAATGGATGGGTGGTGATCAGTCGAATAATGTAGCAAGTCATCATCATGGTCATTCTGTTGCTACTGGGGGTGTACATGACAATCGGACAGCCTCTAACAAGCATCCATCTTTAAATAAAGGAACTGATATGATATTGGCTAAAACGAGTGATCAGGGAGAGACATCNTTGCAATCTAACACACTCCATCAAGAATCTCTGCAGGCCAAGCCTGCTGATTGGGCACGAATGTTGGAGGTTGCAACTCAGAAGAGAACTGAAATTCTTATGCCTGAGAATCTTGAGAACATGTGGACAAAAGGAAGAAATTACAAAAGGAAGGAGAACAAAATTATAAAGCCTGGGTTTCAGGATCTTCCTGCAAAGGGTCCTGCTACAGACAGTTCACTGCGTTATAGAAAAATGGCTCAGGAAACATTAGTGAGTAAACGTGGAAAGTATGAAGTTGCAGAAGGGAAGTCGTCTCTGCCGTCAATGCATGCCTTGGGTTTGGATCCCCTACAGAGTGTTGGAAGTACAAATAGTTCAGAATCTTCTCAAAACCCTGACAAAAAATTATCTTCTGAGGGAGAGCTTGGAGTTGATACAANGAAGGGTACAGGGGATCTTGCTTCTGATGAGTATAAAAGTCCACTAAAGAGGTCTAACAGTGCTTCTGTCTTGGGAATCCAACCTAATAATGAAGGTGGGTCCATTATTTCAGAGTTTTACAACCCTGAATTTGAGAGGCACAGTGAAGGATTTCAGGGAAAGAGTTCTTCTGACATGATTATTAGGAAAGAGGAGCAATTAGTTCCTAAGCTCCGGTGCCGGGTTATGGGAGCATATTTCGAGAAAATTGGGTCCACATGTTTTGCTGTCTACTCAATTGNAGTGACTGATGCACAAAATAGAACTTGGTTTGTAAAAAGAAGATACAGGAATTTTGAGCGATTGCATCGACAACTTAAAGATATTCCAAATTACACATTACATTTGCCTCCTAAAAGGATATTTTCCTCAAGCACTGATGATGCCTTTGTACATCAACGTTGCATTCAGCTTGATAAATATCTCCAGGATCTCCTGTCAATAGCTAATGTTGCTGAACAACACGAAGTATGGGACTTTTTTAGTGTTTCCTCAAAGAACTACTCTTTTGGGAAATCTCCTTCAGTNATGAAGACGTTGGCAGTCAATGTAGATGATGCGGTGGATGATATTGTACGCCAGTTCAAGGGGGTTTCAGATGGTTTAAGGCGAAAGGTTGTTGGTTCACCATCCATCATCAATGAAGGATCTTCTACATCTACCACATGGAACTTGTCCTGGAATGCAGATGAATTGGATAGAAGTATTCCAAGGCAAANTACTACAGAAAGTGTGTTAAGTTCTGATACTGAGGAAGGTAACCCATCACTGGTAACAAACCATGCTGAAGAGTCCAGCAACTTGGATTTTGNTGGAAAGCGTGATGTGTTGGTGGAAGCTAGGGTTGGCAATGATGTTCCAGCTACAAATTTCATTCTTATTCATGATAAGTTGGTGGATCCTGTTGGAGTGCCACCTGAGTGGGCCCCACCTAATGTGAGTGTCCCTCTCTTGAATTTGGTTGACAAGATATTTCAGCTTAAGAAAAGAGGTTGGATAAGAAGACAGGTCTTTTGGATATCGAAACAGATATTGCAGTTGGTGATGGAAGATGCTATTGATGATTGGCTCCTGAGGCAGATTCATTGGCTCCGGAGAGAGGACACAATTGCCCAAGGGATTCGGTGGCTTCAAGATGTCCTCTGGCCTGGTGACACACCTCAGATAATTAGTGGCAGTGATCAAAAGCCTTCTCCAACAGTTAGTGGATCTNGGGGAAGCAACATCATGAAACATGAATCAGGGTCTTTTGAGCAACAGCTTGAGGCTGCTCGTAGAGCAAGTGACATCAAGAAATTGCTATTTGATGGAGCTCCAACAACTCTAGTCAGCTTGATTGGGCATAAGCAGTACAGNCGTTGTGCCAGGGATATGTATTACTTTAGTCAGTCTACTATATGTGTGAAGCAACTTGCTTATGCAATTCTGGAACTTGTACTTGTCTCCATCTTCCCTGAGATGAGGAATGTTGTGTTGAGTGTTCATGAGAGTNTGCATGTTCACCAACCAACATAGAGTTCCTTGTCACCTGTGGTAGTGGCCTGCCTATTTTGTACATGAAATTGGGAATACCATGTTTTGGTTGTCTGGAGCCATTGGTTTTATATGGCCTTGCTGGTTGGTAAGCATTATGGATGCAAGAAGAGGAGCTATGACACATGATTTGGGAACTCAGCGATTGGTTTTGAATCTCTTTCCAACTGTATAAAACTTAGATTTAGGTTGTGTACAGAAACAATCATGTTGTGTCACTATGCTTTGTCAAGGCATACCCCATTT

Protein Sequence

>Glyur000006s00001681.1
MESVHDLIQEAKLRTLWWALCIFAVSYFLTHTSKSMWMNVPMSILFVSALRILFNKVEFRWKVQRPRSQTYLSHLERKQLSLNDPRLSSXPPSAKWKRKIDSPAVEAAMGDFIDKILKDFVVDLWYSEITPDREFPEQIRAIIMDVLAEISARVKEINLVDLLTRDLIDLIGDHLELFRRNQAAIGVDVMKTLSSEERDDRLKFHLLNSKELHPALISPESEYKVLQLLMSAVLATVLRQREAQCPVIRSIARELLTCLVMQPIMNLASPGYXNELIESLLILLNDDGTKWMGGDQSNNVASHHHGHSVATGGVHDNRTASNKHPSLNKGTDMILAKTSDQGETSLQSNTLHQESLQAKPADWARMLEVATQKRTEILMPENLENMWTKGRNYKRKENKIIKPGFQDLPAKGPATDSSLRYRKMAQETLVSKRGKYEVAEGKSSLPSMHALGLDPLQSVGSTNSSESSQNPDKKLSSEGELGVDTXKGTGDLASDEYKSPLKRSNSASVLGIQPNNEGGSIISEFYNPEFERHSEGFQGKSSSDMIIRKEEQLVPKLRCRVMGAYFEKIGSTCFAVYSIXVTDAQNRTWFVKRRYRNFERLHRQLKDIPNYTLHLPPKRIFSSSTDDAFVHQRCIQLDKYLQDLLSIANVAEQHEVWDFFSVSSKNYSFGKSPSVMKTLAVNVDDAVDDIVRQFKGVSDGLRRKVVGSPSIINEGSSTSTTWNLSWNADELDRSIPRQXTTESVLSSDTEEGNPSLVTNHAEESSNLDFXGKRDVLVEARVGNDVPATNFILIHDKLVDPVGVPPEWAPPNVSVPLLNLVDKIFQLKKRGWIRRQVFWISKQILQLVMEDAIDDWLLRQIHWLRREDTIAQGIRWLQDVLWPGDTPQIISGSDQKPSPTVSGSXGSNIMKHESGSFEQQLEAARRASDIKKLLFDGAPTTLVSLIGHKQYXRCARDMYYFSQSTICVKQLAYAILELVLVSIFPEMRNVVLSVHESXHVHQPT

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	486079	494612	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0035091 phosphatidylinositol binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001681.1	PF02194.10	PXA	102	280	5.20E-53
Glyur000006s00001681.1	PF00787.19	PX	566	663	4.10E-19
Glyur000006s00001681.1	PF08628.7	Nexin_C	831	966	2.30E-18
Glyur000006s00001681.2	PF02194.10	PXA	102	280	5.50E-53
Glyur000006s00001681.2	PF00787.19	PX	566	663	4.20E-19
Glyur000006s00001681.2	PF08628.7	Nexin_C	862	997	2.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.875
SRR1783600	control	3.934
SRR1783602	moderate drought stress	6.072
SRR1811619	moderate drought stress	6.021

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.829
DRR006520	Root Summer glycyrrhizin high producing strain	7.712
DRR006521	Root Winter glycyrrhizin high producing strain	10.500
DRR006522	Root Winter glycyrrhizin high producing strain	10.214
DRR006523	Root Summer glycyrrhizin low producing strain	9.584
DRR006524	Root Summer glycyrrhizin low producing strain	9.573
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.123
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.123

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.847
SRR2868004	Drought Stress (root)	21.570
SRR2967015	Control (root)	25.257

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.940
SRR9715740	Leaf	9.404
SRR9715741	Leaf	12.638
SRR9715739	Root	2.141
SRR9715742	Root	8.617
SRR9715743	Root	7.869

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.443
SRR8749028	MeJA induced 9h	10.346
SRR8749029	MeJA induced 9h	5.509
SRR8749030	Uninduced	5.972
SRR8749031	Uninduced	7.455
SRR8749032	Uninduced	3.995

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.832
SRR8400027	Control - Root	13.995