Gene detail

Gene detail information of Glyur000006s00001677

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19000.1	1.00E-96	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	NP_001239622.1	0	uncharacterized protein LOC100809985 [Glycine max]
COG	YP_004572412.1	7.00E-50	oxidoreductase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q39110\|GAOX1_ARATH	1.00E-53	Gibberellin 20 oxidase 1
trEMBL	tr\|C6T994\|C6T994_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G15390.1}

Sequence

Transcript Sequence

>Glyur000006s00001677.1
ATGGGAGAGGTGGACCCAGCTTTCATCCAAGAACCAGAACACAGGCCTAAGCTCTCCATCAATGAAGCCAAAGGAATTCCTGAAATCGACCTCTTCCCAATAACCCAACATCATGCAGTTGCAGACCCATCTGCAATACAAGGCTTAGTGGAGGAGATAGGAAGTGCATGCAAGGAGTGGGGATTCTTCCAAGTCACAAACCATGGGGTGCCTTTCAGTCTGAGGCAGAGGCTCGAGGAAGCCTCCAAGGTGTTCTTTGCTCAGAACTTGGAGGAGAAGAGGAAGGTTAGCAGAGATGAGAGCAACGTATGTGGATACTATGACACAGAGCACACCAAGAATGTTAGGGACTGGAAGGAAGTGATTGATTTTCAAGTCATAGATCCAACTTTGATCCCCGTCACTTCTGATGAACATGATGATCGACTCACTCAATGGACTAATCAATACCCTGAATTCCCTCCAAACTTTAGGGTTGTAATCCAAGAGTATATTCAAGAGGTGGAAAAGTTNGCCTTTAAGTTGCTGGAGCTCATAGCTCTGAGCTTAGGCCTTGAAGCGAAGAGGTTTGAAGAATTCTTCATCAAAGATCAAACCAGCTTCATTAGGCTCAACCACTACCCTCCNTGCCCTTCCCCTCAACTGGCTCTTNGCGTTGGTAGACACAAGGACGGTGGTGCCTTAACCATTCTAGCCCAAGATGAGGTTGGTGGACTTGAAGTCAAACGTAAAACAGATCAAGAGTGGGTTCTAGTTAAACCCACCCCAGATTCTTACATCATCAATGTCGGTGATATTATTCAGGTTTGGAGCAATGATGCGTATGAGAGTGTGGAACACAGAGTGATGGTTAACTCTCAGAAAGAAAGGTTTTCCATTCCTTTCTTCTTTAACCCAACACATGACACCGATGTCAAGCCTTTGGAGGAGCTGATAAATGAGCAAAACCCTCCAAAATATAGGCCATACAAATGGGGCAAGTTTCCCTCCAAAATATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	474186	475439	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001677.1	PF14226.1	DIOX_N	26	151	6.90E-27
Glyur000006s00001677.1	PF03171.15	2OG-FeII_Oxy	201	299	3.00E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.694
SRR1783600	control	2.721
SRR1783602	moderate drought stress	3.264
SRR1811619	moderate drought stress	3.212

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.179
DRR006520	Root Summer glycyrrhizin high producing strain	11.294
DRR006521	Root Winter glycyrrhizin high producing strain	4.750
DRR006522	Root Winter glycyrrhizin high producing strain	5.116
DRR006523	Root Summer glycyrrhizin low producing strain	6.710
DRR006524	Root Summer glycyrrhizin low producing strain	6.520
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.093
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.301

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.838
SRR2868004	Drought Stress (root)	25.303
SRR2967015	Control (root)	5.619

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.216
SRR9715740	Leaf	14.316
SRR9715741	Leaf	14.437
SRR9715739	Root	0.557
SRR9715742	Root	2.258
SRR9715743	Root	1.315

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.181
SRR8749028	MeJA induced 9h	6.802
SRR8749029	MeJA induced 9h	2.645
SRR8749030	Uninduced	63.367
SRR8749031	Uninduced	31.346
SRR8749032	Uninduced	30.423

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.376
SRR8400027	Control - Root	2.102