Gene detail information of Glyur000006s00001669 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G19050.1 | 0 | phragmoplast orienting kinesin 2 |
| NR | XP_006575019.1 | 0 | PREDICTED: phragmoplast orienting kinesin 2-like [Glycine max] |
| COG | YP_004781659.1 | 1.00E-07 | SMC domain containing protein [Pyrolobus fumarii 1A] |
| Swissprot | tr|Q27IK6|POK2_ARATH | 0 | Phragmoplast orienting kinesin 2 |
| trEMBL | tr|I1JEX7|I1JEX7_SOYBN | 0 | Kinesin-like protein {ECO:0000256|RuleBase:RU000394} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00006 | 425716 | 439985 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000006s00001669.1 | PF00225.18 | Kinesin | 204 | 535 | 7.30E-110 |
| Glyur000006s00001669.1 | PF12711.2 | Kinesin-relat_1 | 676 | 761 | 1.80E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.313 |
| SRR1783600 | control | 2.308 |
| SRR1783602 | moderate drought stress | 2.098 |
| SRR1811619 | moderate drought stress | 2.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.458 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.399 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.228 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.234 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.692 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.705 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.614 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.224 |
| SRR2868004 | Drought Stress (root) | 4.875 |
| SRR2967015 | Control (root) | 5.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.100 |
| SRR9715740 | Leaf | 0.091 |
| SRR9715741 | Leaf | 0.330 |
| SRR9715739 | Root | 0.105 |
| SRR9715742 | Root | 0.284 |
| SRR9715743 | Root | 0.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.312 |
| SRR8749028 | MeJA induced 9h | 5.149 |
| SRR8749029 | MeJA induced 9h | 4.603 |
| SRR8749030 | Uninduced | 0.186 |
| SRR8749031 | Uninduced | 0.248 |
| SRR8749032 | Uninduced | 0.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.308 |
| SRR8400027 | Control - Root | 7.561 |