Gene detail

Gene detail information of Glyur000006s00001668

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33950.1	0	Protein kinase superfamily protein
NR	XP_007042345.1	0	Kinase superfamily protein isoform 2 [Theobroma cacao]
COG	YP_004862245.1	3.00E-26	protein kinase domain-containing protein [Candidatus Chloracidobacterium thermophilum B]
Swissprot	tr\|Q940H6\|SRK2E_ARATH	0	Serine/threonine-protein kinase SRK2E
trEMBL	tr\|A0A061E7H5\|A0A061E7H5_THECC	0	Kinase superfamily protein isoform 2 {ECO:0000313\|EMBL:EOX98178.1}

Sequence

Transcript Sequence

>Glyur000006s00001668.1
ATATGCTTCTGCTAAATGCTAAACTGCTTTGATGAATCTGAGGCTCTGAATAAAATGAAAAAGATAAAAACTTCGGAGCAACAGAAACACCATATCGACACATACACAGTGAGAGAGAAAGAGAAAGAGAGAGAGTTCACGTGTATCACCACCGCCCTTCAGCATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGCTTAGAGCATATCCATTATCCAAGCTCTGTTCTGTAACTCATTTCAAGTTGGGTTGGTGAACCCTTCACGGGCTCGAACCATTTAGTGGTCTCTTTATTCACCCACCAACTCTGTTTCAGTGGTCCTCGCCGAACCACGTCAAAGGCCAACACAGCTTTCTTCTCTCTTTGTTCAATCTGAAAAAAACGGGGTTTTGTTTTGGGGCCCTTCCTTCCCACCATTGCCCTTTCACTCTGCTTTTTTTTGCTTTTATCTTTTGGGGATTGATAATAACAATAATGTGAGAGTTGAGCTTCTTGGGGTGCTCACTGGCTGCATAAAGGGTTCAACTTTTGTGTTGGTGTTTTTATTTTGAGCAAAATGGATCGTTCTGCGATCACTGTTGGGCCAGGAATGGATTTGCCGATCATGCATGACAGCGATCGCTATGAACTTGTGCGTGATATTGGTTCTGGTAATTTCGGGGTAGCCAGGCTTATGAGGGACAAACACACTGATGAACTTGTTGCTGTTAAGTATATCGAGAGAGGTGAAAAGATAGATGAAAATGTACAAAGGGAAATTATAAATCATAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTTATATTGACCCCAACACACTTGGCAATTGTTATGGAATATGCTTCTGGAGGAGAGCTATTTGAGAGAATATGCAATGCAGGGCGGTTCAGTGAGGATGAGGCACGCTTCTTCTTCCAACAACTTATATCAGGTGTTAGCTATTGTCATGCAATGCAAGTATGCCATCGTGACTTGAAGTTGGAAAACACATTGTTGGATGGTAGTCCAGCTCCCCGTTTGAAGATTTGTGATTTTGGCTATTCAAAGTCCTCTGTACTACATTCCCAACCAAAATCTACTGTCGGTACCCCTGCATACATCGCTCCTGAAGTCCTGCTTAAGAAGGAATATGATGGCAAGATTGCAGACGTGTGGTCTTGTGGGGTGACTTTATATGTCATGTTGGTGGGTGCATACCCTTTTGAGGATCCAGAGGAACCTAAAAATTTCCGCAAGACGATACATAGGATTTTAAATGTTCAGTACTCAATTCCTGACTATGTTCATATATCTCCTGAATGCCGCCATCTGATCTCAAGGATTTTTGTTGCTGATCCTGCAAAGAGAATAAGTATTCCTGAGATTAGAAACCATGAGTGGTTTTTGAAGAACCTTCCGGCTGATCTCATGGATGGGAATGCAATGAACAGCCAGTTTGAGGAGCCTGATCATTCACCAATGCAAAGCGTCGAAGAAATAATGCAGATAATCACCGAGGCTACAATTCCTGCTGCCGGAACTCCGAATCTTAACCAGTATCTTACTGGTAGTTTGGACATCGATGACGACATGGAGGAGGACCTAGACAGTGATCCTGACCTTGATATTGATAGCAGTGGAGAAATAGTGTATGCTCTGTAAGTTGGTGGAAGGCCAAGGAATTGGCCTCTGTGGTCAATTTAATGTTATATACCCTGGGTTGTTCAGTACTGTGGAAAATGTGAGAAAAATATTTCACTTTCTACAAGGAAGGATTCTGGGATCGAAATTTCCTTTATATTGTGAGAGAATCCATCCTGCTTGTATTTAAGTTCTGTTTATGATCTTAACCTGTGCNGCTTTGTATTGATAGCTGTGTTGTTTTTATATTACCATATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	420869	424843	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14498	SNRK2	EC:2.7.11.1	MAPK signaling pathway - plant	map04016
			Plant hormone signal transduction	map04075

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001668.1	PF00069.20	Pkinase	23	279	6.90E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.437
SRR1783600	control	30.442
SRR1783602	moderate drought stress	47.404
SRR1811619	moderate drought stress	47.314

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.407
DRR006520	Root Summer glycyrrhizin high producing strain	30.270
DRR006521	Root Winter glycyrrhizin high producing strain	47.839
DRR006522	Root Winter glycyrrhizin high producing strain	46.733
DRR006523	Root Summer glycyrrhizin low producing strain	35.472
DRR006524	Root Summer glycyrrhizin low producing strain	35.676
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.863
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.171

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.361
SRR2868004	Drought Stress (root)	31.234
SRR2967015	Control (root)	34.634

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.196
SRR9715740	Leaf	53.250
SRR9715741	Leaf	54.147
SRR9715739	Root	13.377
SRR9715742	Root	28.101
SRR9715743	Root	24.702

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.667
SRR8749028	MeJA induced 9h	10.321
SRR8749029	MeJA induced 9h	5.524
SRR8749030	Uninduced	5.340
SRR8749031	Uninduced	2.222
SRR8749032	Uninduced	3.132

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.586
SRR8400027	Control - Root	30.258