Gene detail

Gene detail information of Glyur000006s00001664

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19090.1	7.00E-107	RNA-binding protein
NR	AES90236.2	0	LA-related protein 6 LA RNA-binding domain protein [Medicago truncatula]
Swissprot	tr\|Q9LHL3\|LRP6C_ARATH	1.00E-134	La-related protein 6C
trEMBL	tr\|G7JMI2\|G7JMI2_MEDTR	0	LA-related protein 6 LA RNA-binding domain protein {ECO:0000313\|EMBL:AES90236.2}

Sequence

Transcript Sequence

>Glyur000006s00001664.1
GTACTATTGAGAAATGAAATGAGTTTTGACTATATCTTGATGGCAATGAGGAAAGAAGAAATTGATTTGAGGAATGAGCATGGTTTGAGGGATATCATCTGAGGATAGGGAGCAGTTTGGGAGAATAGTAACCTTAGAAGATTTAGTCAAAAGTCCACAAGTGACGGTTGTGTTAAGAAAGAGGTGCCCGTCTTTTGGGCGCGAAACGTGGATTCAATATCGAACGAAAGGCCAAAAACAGTTATTAAGCTTCATGGAAACACAACACTAGGTAAGGGTTTCACAATCACATATCACCCACCATTCTCACAATCACACACAAACACACGCAGATAGAGAAAGAGAAAGAACAAAAATAAAAAAAAAATGGCACAGACACAACCCGAAGAGAAAATCGATGAGAACCCAGAAAAAGATGTCCAAGAAACAGGAAATTCGAGCTTCAAATTCAATGCCCAAGCGCCTGAATTTGTGCCGAGATCGCATACCCAGATGCCAANTTCGGGTTATTTCTACCCTTGCTTCCAGATTCTTGGTGGGTATGGCGATTCTGATTGGTTCTACGTTGGGGACCAGGACCCTGCATGTTTGATCCCCACCACCAATGTGGCGCTACCCACTTGCTCCAAGAATATCCTCACCCCTGATCTCCAGCAAAAGATCATCAAACAGGTGGAGTATCAGTTCAGTGACATGAGCTTGCTGGCAAATGATTCATTCCAGAAACAGATGAATAAGGACCCTGAAGGTTATGTTCCAATAACCCTTATTGCTTCCACCAAAAAGATCAAGTCCCTCGTTAGCAACATTCATCTGCTCACACAAGCTCTCCGTTGTTCTTCAAAACTTGTTGTGAGTGTTGATGGCAAGAAGGTTAAACGTAAACATCCTTTCACTGAGAAGGAGAAAGAGGATTTGCAGTCTCGTACTGTTGTGGCAGAGAACTTACCTGATGATCATTCCCATCAAAATCTTCAGAAAATATTTTCTGTAGTTGGGAGCGTGAAAACGATCAGAATATGCCATCCACAGGAACCTAATTCTTCTCGCCCAAAAAGCGATTTCTTCATCAGTAACAAGCTCCATGCACTTGTGGAGTATGAGACACAAGATATAGCCGAGAAAGCTGTTGAGAAGTTAAATGATGAAAGGAATTGGAGGAAAGGGATGCGAGTAAGGCTGCTGCTCAGATGCTCGCCAAAATCTGTTTTGAAGAATAGAAAGTCAGAATTTGATGGATATCTAGATGAAGATGAGACTCTACATTCTGAAACTGCTGAAGATTCTTCTCATCCAAACAACACTGAATTATTTGTTGAGACTAATGTTGATGAAAATTCAGTAGGATCTAAGAAAGGATGGGCTAGGGGACGCGGAAAGGGAAGAGGGCGCACTCAAAACCATACTGGACGCGGCCTGCTTTCCCCGCCATCTCAATCAAGCAGCGCTGTCGCGACTGAAGCGGCATNTACTAAACCCAATGCTAAGGGGCCTAGAATGCCAGATGGTACAAGAGGTTTTGCCATGGGACGAGGCAAGCCAACCAGTTCTCCTGCTCAACCCAGTTCACCTCAGGAGTAATGAGTACTTAAAGAAAGTTTTTCCCTATGCTCTATAGTGAACTTTAGGAAATTTCTTTTGTATTTCTCAGAAGGTATTCAAAAACAGCAAACTGATTTAGAAGTCCTGTTATGTGGGCTACATGGGTGGTCTCGATCTTTTAGATGTTAGCATTTTAGTAATAATTCAAGGTGTATAGTGTTGTATGGTATGGTGGATCCCGATGACAATGGCCACAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	377920	381143	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

cellular_component

GO:0005634 nucleus

GO:0030529 intracellular ribonucleoprotein complex

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001664.1	PF07145.10	PAM2	24	40	0.00013
Glyur000006s00001664.1	PF05383.12	La	99	158	3.60E-19
Glyur000006s00001664.1	PF00076.17	RRM_1	192	260	1.20E-06
Glyur000006s00001664.2	PF07145.10	PAM2	24	40	0.00014
Glyur000006s00001664.2	PF05383.12	La	99	129	1.40E-07
Glyur000006s00001664.2	PF00076.17	RRM_1	221	289	1.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.540
SRR1783600	control	0.544
SRR1783602	moderate drought stress	1.601
SRR1811619	moderate drought stress	1.599

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.979
DRR006520	Root Summer glycyrrhizin high producing strain	4.923
DRR006521	Root Winter glycyrrhizin high producing strain	2.179
DRR006522	Root Winter glycyrrhizin high producing strain	2.285
DRR006523	Root Summer glycyrrhizin low producing strain	0.617
DRR006524	Root Summer glycyrrhizin low producing strain	0.482
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.293
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.294

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.722
SRR2868004	Drought Stress (root)	0.764
SRR2967015	Control (root)	0.767

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.408
SRR9715740	Leaf	0.685
SRR9715741	Leaf	0.414
SRR9715739	Root	0.523
SRR9715742	Root	3.322
SRR9715743	Root	1.790

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.582
SRR8749028	MeJA induced 9h	7.002
SRR8749029	MeJA induced 9h	5.006
SRR8749030	Uninduced	1.350
SRR8749031	Uninduced	1.304
SRR8749032	Uninduced	0.795

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.299
SRR8400027	Control - Root	9.193