Gene detail

Gene detail information of Glyur000006s00001661

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G15790.1	3.00E-141	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase
NR	NP_001241932.1	0	uncharacterized protein LOC100804110 [Glycine max]
COG	YP_007069501.1	7.00E-65	cyclophilin type peptidyl-prolyl cis-trans isomerase [Leptolyngbya sp. PCC 7376]
Swissprot	tr\|Q9C566\|CYP40_ARATH	0	Peptidyl-prolyl cis-trans isomerase CYP40
trEMBL	tr\|C6TJ00\|C6TJ00_SOYBN	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU22890.1}

Sequence

Transcript Sequence

>Glyur000006s00001661.1
GCTATTGGATGAGCACTTAAATACCAAACCCTTACATTTTCAACATTACNGTAGAAATTGCCTTATATTTATTCAAAATATCAATCTGTGTTTACGTTATTTTTCCTAAAATAATGTTCTTGAGAATTGCACTTTATCTACTCTGTTCATATGCCTATGCGGTAACGGAGATGATCAGCTGAGGAAACAAACGCATACAACACCTCATTATTCATTCATGGAGTATCACACTTTCACACACACACACAAAGTGGAAGTGGCTGTGACATGAAGGTTGATACTTAATAATAGAGAGAGACAGAGAGGCAAATAGCTGAGTCCACTGGTGAATCAAAATTACGAAGAGAGAGAGAGAGATGGGGAAAACAAGGTGCTTCTTGGACATTTGCATAGGGGAAGAGCTAGAAGGAAGGATAGTGGTGGAGCTTTACAACGATGTGGTACCCAAAACTGCTGAGAATTTTAGAGCTCTCTGCACTGGCGAGAAAGGCATTGGTCCAAATACTGGGGTGCCCCTCCATTTCAAGGGATCTTGCTTTCATCGTGTTATTAAAGGCTTTATGATCCAAGGAGGTGATATATCTGCTGGAGATGGTACTGGAGGAGAATCTATATATGGACTTAAGTTTGAGGATGAAAATTTTGAGTTGAAGCATGAAAGGAAAGGGATGTTATCAATGGCAAACTCTGGTCCTAATACAAATGGGTCTCAGTTTTTTATTACTACTACCCGCACTTCTAATCTAGATGGTAAGCATGTTGTATTTGGGAAAGTAGTTAAAGGAATGGGAGTGGTCCGTTCAATTGAGCATGTTACAACCGGAGATGATGACCGTCCCACTCTTGATGTTAAAATTGTGGATTGTGGAGAAATTCCTGAAGGAGAAGATNACGGGATATCTAACTTTTTCAAAGATGGCGATACTTATCCCGATTGGCCAGCAGACCTTGATGAGAGCCCTAGTGAACTTGACTGGTGGACGAAGTCTGTTGACTCGATTAAAACTTTTGGCAACGAGTATTACAAGAAACAAGACTACAAAATGGCTCTAAGGAAGTATCGNAAGGCTTTACGTTACCTGGATATTTGTTGGGAGAAAGAAGGGATTGATGAAGAGAAAAGTTCAGGTTTGAGAAAAACGAAGTCACAGATTTTTACAAACAGCTCTGCTTGTAAATTGAAATTAGGGGATCTTAAAGGCGCATTATTGGATACAGATTTTGCAATGCGTGAAGGAGACAACAATGCCAAAGCTTTGTTCCGCCAAGGACAGGCATGCATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTGACCTTGGAGCCAAATGATGCTGGAATTAAAAAAGAACTTGCTGCTGCCAGGAAGAAGGTGAGTGCATGTGCATCTATGGAAATGGAACAAGCATTGAAGCATTATATACTTGTNGGGAACCTAACTGGTTATGTTTGTTGCAGATTGCTGATAGGCATGATCAAGAGAAAAAAGCATATAGCAAGATGTTCCAATAGCACAAAGGTTTATGTAAAGCCGAGGAGAACAATCATATCACAGCAGCATATAGAAAAGATTAAAAGTTTCAGGGCTGAACCCCATTGTAACAAAAAGTATTAGGAATGAGGCTCAGTTGAAATAAGTCGATAAGTTGGTATTGTACGTGAGGAAATTTTTAGCCAACAATTTTGTCAACATTTTTCTTTTACTGTGAACTCAAAGATCATTTTATTGGTGGTGATTGAAATGCAGTTTAGCTGATGGACCACAGACAATGCTGTATGTGATTTACTGATTTTGATATATTTACTAGTATTATCTATTGGGAACTTACACGATGTAGCACATTTATTGGTTAGACCGTGGTTTTAAGTTCAATATTTAGACTGAATAACNTCTTTGTCTGGTTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	353559	358284	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000413 protein peptidyl-prolyl isomerization

GO:0006457 protein folding

molecular_function

GO:0003755 peptidyl-prolyl cis-trans isomerase activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001661.1	PF00160.16	Pro_isomerase	11	171	4.00E-48
Glyur000006s00001661.1	PF13414.1	TPR_11	215	287	2.20E-06
Glyur000006s00001661.1	PF00515.23	TPR_1	298	331	1.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.400
SRR1783600	control	7.489
SRR1783602	moderate drought stress	7.523
SRR1811619	moderate drought stress	7.345

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.013
DRR006520	Root Summer glycyrrhizin high producing strain	36.706
DRR006521	Root Winter glycyrrhizin high producing strain	2.996
DRR006522	Root Winter glycyrrhizin high producing strain	3.035
DRR006523	Root Summer glycyrrhizin low producing strain	19.423
DRR006524	Root Summer glycyrrhizin low producing strain	19.466
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.758
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.655

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.263
SRR2868004	Drought Stress (root)	26.416
SRR2967015	Control (root)	24.611

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.066
SRR9715740	Leaf	16.266
SRR9715741	Leaf	16.938
SRR9715739	Root	1.585
SRR9715742	Root	9.254
SRR9715743	Root	7.742

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.853
SRR8749028	MeJA induced 9h	18.943
SRR8749029	MeJA induced 9h	19.443
SRR8749030	Uninduced	19.527
SRR8749031	Uninduced	11.107
SRR8749032	Uninduced	11.632

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.146
SRR8400027	Control - Root	27.930