Gene detail

Gene detail information of Glyur000006s00001657

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50530.1	2.00E-95	CDPK-related kinase
NR	XP_007156536.1	2.95E-176	hypothetical protein PHAVU_003G294300g [Phaseolus vulgaris]
COG	YP_007468874.1	1.00E-11	serine/threonine protein kinase [Desulfocapsa sulfexigens DSM 10523]
Swissprot	tr\|Q9SCS2\|CAMK5_ARATH	2.00E-123	CDPK-related kinase 5
trEMBL	tr\|A0A067E5J0\|A0A067E5J0_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO49130.1}

Sequence

Transcript Sequence

>Glyur000006s00001657.1
CCTCATCCACCATGACAATCACCCTTTATTTTCTTCTTCAAGTTTTTATTTTTCTTTCCATAATATAGTTGTATTTCGTTTGGTACGGCATCGTTGGGTATCAGTCAAAAGGGGGAACAATATGTAGCCAAACCTGTGGCAACGATACAATCCCCCCTTTGACTGTTCTTCTCATCATCATCGCCGTAATCAATCATCAATATTATCACCGTCGTTGTTGAGTCATTCAGCTCTTCCCCTTCAATTCCAGAGGCCATAATAGCCCCTTTCTCTTCTCTCCTCCACTCCCCAAATTCAATGAACACCCAACAATCAATACTCACGTGCATGCCACGTGTCCCGTGAGGTTGTCCATCTCTCCTGCTTCTAGTTCTAGTTCATCTTCTTCTCCCACACCTAAACAAATCCACCTAGCCCCTCTCTCAAACCTTCTTCCTACCCACTTTTTAACTCTCTGCAAAGTTCGAATCTTTAGCAGAAAACAACAACACCCAGAAAAACCTTTTCCCCTGCAATGCGACAACAACCAATGATTCAGTAGTTAAGCTTCCGTGATCGTTTCCAACACNATGGGGGTTTGCACTTCGAAGCCGCAGAAACCCAACCCATATGTTCCTCGGGAACTGGAAGGTGACCCTTCGCAAATCCCGAAAACCCCACTAAGCCCCGACGCCGGAAACCACCGCCGGAAAGATGACGCCGTCGCCGGAAAGCAGTCTCCGTTCTTCCCTTTCTACAGTCCCAGCCCAGCTCGGTTCCTTAAGAAGTCTCCGGCGACGCCGTCCGGGGGAGGGAGCCGGAGCGCGAGCTCGACGCCGAGGAGGTTTTTCCGGCGGCCCTTCCCTCCGCCTTCTCCGGCGAAGCACATAAGGGCCGTGCTGGCCAGGAGACAGGGGAAGAAGGCTGCCGCGGCGATACCGGAAGAGGCGGAGGCCGGAGGTGCTGCGGCGGAGCTGGATAAGAGGTTTGGGTTCTCGAAGGAGTTCACTAGTAGGCTTGAGGTTGGGGAAGAAGTGGGTAGGGGGCATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAGGGTGAGCTTAAGGGTCAACAAGTTGCTGTGAAAGTCATCCCTAAAGCAAAGATGACAACTGCAATTGCAATTGAAGACGTGAGAAGGGAGGTGAAAATATTGCGAGCTTTGAACGGGCACAGCAATTTGGTACAATTCTATGATGCATTTGAAGACCAAGATAATGTCTACATTGCCATGGAAGGAGGGAAATACTCAGAAGATGATGCGAAGGCTGTCATGGTACAGATACTAAATGTTGTTGCATTTTGTCATCTTCAGGGTGTGGTGCACCGAGATCTTAAGCCTGAGAATTTTTTGTATACTTCAAAGGATGAAAGTTCCGAGTTAAAAGCTATAGACTTTGGATTATCTGATTTTGTCAGACCAGGTCATCCTTGGATACGGAATTACAATAACGTAAAAGTTCCACTTGATATTTTAATATTTAAGCTCATGAAGGTTTATATGAGATCGTCATCCTTGCGCAAGGCTGCCTTAAGGGCTTTGTCAAAGACGTTGACTGCTGATGAACTCTATTATTTAAGGGAGCAATTTGCACTGTTGGAACCAAGCAAAAATGGCAGCATATCCTTAGAGAACATTAGCAAGGCCTTGAAGAAATATGCAACAGATGCCATGAAAGAGTCTCGCATCCCTGANTTTATTTCCTCGCTGAGTACTTTACAATATAGAAGGATGGATTTTGAAGAATTTTGTGCAGCTGCATTAAGTGTGCATCAACTTGAAGCACTTGATCGTTGGGAACAACATGCCCGCTGTGCGTATGAACTTTTTGAGAAAGATGGAAACAGGGCTATTGTCATTGAAGAACTTGCTTCAGAACTTGGACTTGGTCCTTCTATTCCTGTTCATGTTGTTCTTCATGACTGGATACGCCACACTGATGGGAAGTTAAGCTTTCTTGGCTTTGTCAAATTATTACATGGTGTATCTAGCCGAAGCCTTGCAAAGGTTCAGTAAAGATGTAAAGCAAAGCCTCTGCTATGTGGCTCAATCATATTTGAATTTGTATCTAGTTTGCTGCAACTGATGATTGTGTCTCCTTGGTATCTGAAGCTCTTGCAAGCATAGCCCATTCAAGTACACAGTTTCACAATGAAATGCAAAATGATTCTTTTGAAGGCGCTCAAATTGTAAAATAGTCTACAGAACTGTGGCTTATGAATTATTAATATATGATTTGTAGATTTAGAATTAGCTTTGCTTCGATGGGTGGTAATAATTTCCTGTCACTTTGTATTAATGAAATGCCTTTGTGTACACGTTACTCTATGCTTGCTAGTCTTATAATTTCTACTCTTATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	335532	340812	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001657.1	PF00069.20	Pkinase	144	285	1.40E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.064
SRR1783600	control	38.105
SRR1783602	moderate drought stress	36.874
SRR1811619	moderate drought stress	36.803

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	50.840
DRR006520	Root Summer glycyrrhizin high producing strain	50.849
DRR006521	Root Winter glycyrrhizin high producing strain	16.114
DRR006522	Root Winter glycyrrhizin high producing strain	15.496
DRR006523	Root Summer glycyrrhizin low producing strain	25.637
DRR006524	Root Summer glycyrrhizin low producing strain	26.606
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.786
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.584

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	118.331
SRR2868004	Drought Stress (root)	135.069
SRR2967015	Control (root)	113.102

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.921
SRR9715740	Leaf	69.444
SRR9715741	Leaf	70.701
SRR9715739	Root	29.530
SRR9715742	Root	54.726
SRR9715743	Root	45.983

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.113
SRR8749028	MeJA induced 9h	13.370
SRR8749029	MeJA induced 9h	7.661
SRR8749030	Uninduced	12.281
SRR8749031	Uninduced	9.725
SRR8749032	Uninduced	9.562

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	81.871
SRR8400027	Control - Root	73.043