Gene detail information of Glyur000006s00001652 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G15760.1 | 9.00E-16 | Protein of unknown function (DUF1645) |
| NR | XP_003608020.1 | 8.72E-125 | hypothetical protein MTR_4g086620 [Medicago truncatula] |
| trEMBL | tr|G7JMG3|G7JMG3_MEDTR | 3.00E-125 | Calmodulin-binding protein {ECO:0000313|EMBL:AES90217.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00006 | 317292 | 318902 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000006s00001652.1 | PF07816.6 | DUF1645 | 116 | 319 | 2.30E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.742 |
| SRR1783600 | control | 2.519 |
| SRR1783602 | moderate drought stress | 4.990 |
| SRR1811619 | moderate drought stress | 4.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.777 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.356 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.274 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.545 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.191 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.060 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.925 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.054 |
| SRR2868004 | Drought Stress (root) | 32.776 |
| SRR2967015 | Control (root) | 31.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.384 |
| SRR9715740 | Leaf | 13.740 |
| SRR9715741 | Leaf | 27.999 |
| SRR9715739 | Root | 47.601 |
| SRR9715742 | Root | 47.993 |
| SRR9715743 | Root | 48.685 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 71.517 |
| SRR8749028 | MeJA induced 9h | 59.169 |
| SRR8749029 | MeJA induced 9h | 92.498 |
| SRR8749030 | Uninduced | 79.378 |
| SRR8749031 | Uninduced | 37.825 |
| SRR8749032 | Uninduced | 83.646 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.685 |
| SRR8400027 | Control - Root | 15.720 |