Gene detail

Gene detail information of Glyur000006s00001647

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47480.1	3.00E-68	alpha/beta-Hydrolases superfamily protein
NR	XP_004505198.1	1.02E-171	PREDICTED: probable carboxylesterase 2-like [Cicer arietinum]
COG	YP_557435.1	2.00E-18	esterase/lipase [Burkholderia xenovorans LB400]
Swissprot	tr\|Q9SX78\|CXE2_ARATH	2.00E-87	Probable carboxylesterase 2
trEMBL	tr\|G7JMF6\|G7JMF6_MEDTR	4.00E-171	Alpha/beta hydrolase fold protein {ECO:0000313\|EMBL:AES90210.1}

Sequence

Transcript Sequence

>Glyur000006s00001647.1
ATGGATCCAAACACCAACAACGAGGTTGTCCGTGAGTTCCCCCACCTCTTCCGTCTCTACAAAGACGGCCGCGTCGAGCGCCTCCTCGGCACCGAAACAACTCCCTCCGGCACCGATCCCGCCACTGCCGTCGAATCCAAAGACATCACCATCAACCCCCAAACCTGCATCGGCGCTCGCCTCTACCTCCCCCCAAACGCCGCCTCTTCTCCCAACAAACTCCCCCTCCTCATCTACATCCACGGCGGCGCCTTCTGCATCTGCACCCCCTTCAACCCCGGCTACCACCGCCACCTCAACACCGTCGCCGCACAGGCAAACGCCGTCATCCTCTCCGTCCATTACAGGCTAGCCCCCGAACACCCCCTCCCCATCGCCTACGACGACTCCTGGGAAGCCATCCAATGGGCCGCCGCCGCCGGCGGCCATTCCGAGCCGTGGATCAAGGACCACGCCGATCTCGACAACGTGTTCTTCGCCGGAGACAGCGCCGGAGCGAACATTGTGCACAACATGGCGATGCGGTGGTCCACGGAGGGGCTCGTGGGGCTGAAGCTGCAGGGGATTGTGTTGATTCACCCTTACTTTGGGAACGAGGAGAAGGACGCGCTGATAGAGTTCCTGTTCCCTACGTACGGAGGACTTGATGACCCGAAGATACACGCGGCGAAGGATCCGAAACTTTCGGGTCTGGGTTGCCGGAGGGTGCTGGTGCTGGTGGCGGAGAAGGATTTTTTGAGAGAGAGGGGACGGAGCTATTATGAGGCGCTGAAAAAGAGTGGGTGGAGCGGGGTGGTGGAGATGGTGGAGACAGAGGGAGAGGGACACGTTTTTCATCTGTTTGACCCCACCAAGGAAAAATCAGTGGCGCTTGTTAACCGCTTTGTCTCTTTCATCAATCAAACAAATCGAGGATTTCAAGTGGGACTGAGATGGGGCAAACAGCGTCGTTCTCGTAACTGTGTACGGGAAAAAAAAATGTGTGAACCAGAAACCAAGGTGCCTCAGCCACACTCACCTTCACCCTCACATGCAGCACCTCGATTTCAACTTCAGCCAAGTACACCACCTGAAATCTCCACCCGCCATGCTTCAAATCCAAACCTTCTGAAGCGAATGCAAGAATCTATCTGCTTCAAGTGTCGCGAAAAAGGACACTGGTCTTGGTATTGCCCTTTAAAATCCCCCAACAACAACAACAACAACAACCTTTCCCCCGTTTCCACCAAGCGGATATGTGTCGTTGCGGCCACGGCTTCTGCGATGTCAAAACTGCCTACAACAGCAGGAACTGGGGCAAAAAGTACTTTGTTTGCCCCATCAAAAGGGGGGCACGATGTAAAAACTTTGTTGGATGGTGCGATGATCCCATCAATGACAGTGATCTGCAGGCTCCTTTGTTCAAGTATCCTGAGTGTGCATGTGGGGCTGCCAAACAACCACCTGTGCATCTCTGACTCTGCGCTTTCACTCCCCTACCTACTTCAACCTTCACACAAACGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	280479	290623	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0003676 nucleic acid binding

GO:0008270 zinc ion binding

GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001647.1	PF07859.8	Abhydrolase_3	77	279	1.50E-42
Glyur000006s00001647.2	PF07859.8	Abhydrolase_3	75	279	3.00E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	76.193
SRR1783600	control	73.569
SRR1783602	moderate drought stress	47.169
SRR1811619	moderate drought stress	47.064

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.208
DRR006520	Root Summer glycyrrhizin high producing strain	16.428
DRR006521	Root Winter glycyrrhizin high producing strain	2.299
DRR006522	Root Winter glycyrrhizin high producing strain	2.270
DRR006523	Root Summer glycyrrhizin low producing strain	11.749
DRR006524	Root Summer glycyrrhizin low producing strain	11.716
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.655
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.503

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.660
SRR2868004	Drought Stress (root)	57.105
SRR2967015	Control (root)	45.056

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.001
SRR9715740	Leaf	27.057
SRR9715741	Leaf	26.106
SRR9715739	Root	109.352
SRR9715742	Root	56.722
SRR9715743	Root	65.624

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.681
SRR8749028	MeJA induced 9h	11.614
SRR8749029	MeJA induced 9h	11.089
SRR8749030	Uninduced	5.564
SRR8749031	Uninduced	3.073
SRR8749032	Uninduced	5.585

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.698
SRR8400027	Control - Root	46.941