Gene detail

Gene detail information of Glyur000006s00001646

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G03550.1	9.00E-84	alpha/beta-Hydrolases superfamily protein
NR	XP_004505201.1	0	PREDICTED: probable carboxylesterase 12-like [Cicer arietinum]
COG	YP_557435.1	2.00E-19	esterase/lipase [Burkholderia xenovorans LB400]
Swissprot	tr\|Q9SMM9\|CXE13_ARATH	6.00E-102	Probable carboxylesterase 13
trEMBL	tr\|G7JMF0\|G7JMF0_MEDTR	0	CXE carboxylesterase {ECO:0000313\|EMBL:AES90204.1}

Sequence

Transcript Sequence

>Glyur000006s00001646.1
ATGGATTCAAGCTCAAGCGAAGTAGCCCACGATTTCTCACCCCTTCTGAAAATCTACAAAGACGGTCGCGTAGAGAGACTCATAGGGTGCGACGTCGTTCCCCCCTCTCTAGATCCCACAACCAACGTGGAATCCAAAGACGTTGTAATCTCAGAAACCGAAGACATATCTGCAAGGATCTTCATTCCCAAACTCAACAACGNGAATGAGAACCAAAAGCTCCCTCTTTTGGTCTACTTCCACGGCGGTGGTTTCTGCATAGAAACACCTTCCTCACCTCCTTACCACAAATTCCTCAACTCCATAGTTTCCAAGTCCCACATCGTTGGCGTTTCGGTTCATTACAGAAGAGCCCCAGAGTACCCTGTTCCCATCGCTCACGAAGACTCATGGACCGCACTCAAATGGGTCGCTTCCCATTTCGGTGGTAACGGTCCCGATGAGTGGCTCAACCGCCACGCAGATTTCGGGAACGTGTTCTTCGCAGGGGATAGTGCTGGTGCCAACATCGCACACCACATGGGTCTTCGTGTTGGAACAGAGGGGCTCCAGGGTGTGAAGCTAGAAGGGATTGTTTTGGTGCATTCCTTCTTTTGGGGCGTGGAAAGGATTGGATCTGAGGCTAAGCAATCTGAACATTTGGCATTGGTGGAGAACTTGTGGCGTTTTACTTGCCCAACCACGATTGGATCCGATGACCCGTTGTTGAACCCGGATAAGGATCCGAATCTGGGGAGGCTGGGTTGTAACAGAGTGCTGGTTTGTGTTGCTGAGAGTGACTTGTTGAAGGATAGGGGTTGGTATTATAAGGAGTTGCTGGACAAGAGTGGGTGGCACGGTGTTGTGGAGGTGATGGAGGCTAAAGGAGAAGGACACGTGTTTCATCTCTTGAACCCAAACTCTGAAAACGCTCTCTCTTTGCTCAATCGATTTGCTTCCTTCATCAACCACGTGTCTCTTGATGCAAAAACAAATAAGGGCGACGAAATGATAAGGCACACAGGCTTCATTGGACACCAACAACTGAAACATCACTATGTGGCAACAAAAGCAAACTACCCGTTCACGAATCTCATTAGCCATTCCTTCCCTTTATCACTTCCCCTTCACAAATCACACAAGCCTCATCTCCTCCCCTCTCTGAAACTGGGAAAACCGTTACACTCTGCATCACCACCGTCATCATCCACCATGGATTCTTCAAGCTCCAACACCGACAGTGAAATAGCGTACGATCTCCCTCCCATCATGAAAGTCTACAAAAACGGTCGCGTGGAGAGGCTAGCCGGTGAAGAGGTTGTTCCTCCATCCCTTGATCCCACGACAAACGTTGAATCCAAAGACGTTGTGATCTCCAAAGAACACGGCATATCCGCGAGGCTTTTCATTCCCAAAGCCACATACCCTCCAACCCAAAAGCTCCCTCTCCTTGTTTATTTCCACGGCGGTGCATTCTGCATCGAAACCCCGTTCTCGCCAAACTACCACAACTACCTCAACTCCGTTTCTTCGCTGGCTAACGTTATCGGTGTCTCTGTTCACTACAGAAGGGCACCGGAACACCCGGTTCCCATCGCTCACGAGGATTCATGGCATGCCCTGAAATGGGTCGCTTCCCATGTGGGTGGGAATGGCCCCGATGAGTGGCTGAATNAACACGCAGATTTTGGGAAGGTGTTTCTTGCAGGGGATAGTGCGGGTGCCAACATTGCGCACTATTTGGGTATTCGGGTTGGAAAGGAAGGGCTTGATGGCGTGAGGCTTGAAGGGAATGTGTATGTGCATCCTTATTTCTGGGGAGCGGATCCAATTGGATCTGAATCGGACCGGTCTGAATATGTGGAAAAGGTCCATAATTTGTGGCGTTTTTCGTGCCCAACCACGACTGGATCCGACGACCCGTTAATCAACCCGGCTAAGGATCCGAATCTGGGGAGCCTGGCTTGTCGCAGGGTGCTTGTTTGTGTTGCTGGGAAGGATTTGTTGAGGGATAGGGGTTGGTATTACAAAGAGTTGCTTGACAAGAGTGGGTGGTCTGGGGTTGTGGAGGTGGTGGAATCAGAGGATGAGGAACATGTGTTTCATATGTTTAAACCAGGCTGTGACAATGCTCTGGCTTTGCTCAACCAAGTTGTTTCCTTTATCAATCGGGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	277074	280250	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001646.1	PF07859.8	Abhydrolase_3	77	295	2.40E-46
Glyur000006s00001646.1	PF07859.8	Abhydrolase_3	477	696	4.30E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.303
SRR1783600	control	10.141
SRR1783602	moderate drought stress	7.562
SRR1811619	moderate drought stress	7.619

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.753
DRR006520	Root Summer glycyrrhizin high producing strain	5.687
DRR006521	Root Winter glycyrrhizin high producing strain	0.390
DRR006522	Root Winter glycyrrhizin high producing strain	0.385
DRR006523	Root Summer glycyrrhizin low producing strain	6.330
DRR006524	Root Summer glycyrrhizin low producing strain	6.164
DRR006525	Leaf Summer glycyrrhizin high producing strain	53.617
DRR006526	Leaf Summer glycyrrhizin high producing strain	53.471

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.770
SRR2868004	Drought Stress (root)	18.282
SRR2967015	Control (root)	11.852

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.411
SRR9715740	Leaf	38.118
SRR9715741	Leaf	23.948
SRR9715739	Root	29.273
SRR9715742	Root	13.441
SRR9715743	Root	16.980

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.160
SRR8749028	MeJA induced 9h	8.614
SRR8749029	MeJA induced 9h	17.006
SRR8749030	Uninduced	6.499
SRR8749031	Uninduced	3.407
SRR8749032	Uninduced	5.829

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.694
SRR8400027	Control - Root	17.804