Gene detail

Gene detail information of Glyur000006s00001645

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49620.1	7.00E-15	Cyclin-dependent kinase inhibitor family protein
NR	XP_007156548.1	7.87E-78	hypothetical protein PHAVU_003G295400g [Phaseolus vulgaris]
Swissprot	tr\|Q94CL9\|KRP7_ARATH	2.00E-17	Cyclin-dependent kinase inhibitor 7
trEMBL	tr\|V7CEB0\|V7CEB0_PHAVU	3.00E-78	Uncharacterized protein {ECO:0000313\|EMBL:ESW28542.1}

Sequence

Transcript Sequence

>Glyur000006s00001645.1
GTTGATTAATTGAGTGAATCTGAACCGTCCATCGAATCAGCACACTCATAAACATTTCTCTGTGATCACTCTCTCTTTTTAAGCTCCCTCCACCTCGCTCACTCTTTCCCTCTCTCTCCAAGCCTCATCCATCTCAAAATAGTAAAGGAGCAGAAAGAGGAAGAGAGAATTAATGGGTGATTGTAAACGCTGTGCTCCAACAATTGCAGCCATGGAGGAGGTTTCTTCAAGCGGACCTACCATCTCCAAGAAAAGGAAAACTATTGTTTCAGCTGCTTTGAAGTTACGCTCTTCGGACCTCCCCAACTTCCACGACATTTCCGTCTCGCCGGAATCTTCCGTGAATTCCGCCGGCACGGTAGTTTCCTGCGAATTTTGGTCGGATCGCTCTCCGCTGTCTTGCTGTAGTTCCAGCTATGTTATTGAAACTGGCGAAGTCGTTAAGGAGCTCGACACCAAGCCGCTGGATCTGGAGCTGCATACCAAGGGTTTCGATTTCGAAACTGTAGACTCAACGAACCGCAATTTCAAATCGTTCAGTTTGTTGAGCGAATTCTCTGGAGACTCGGAAGAAACGTCGATGTTTCCGGCGAAGTCTTCAGCGGCGGTGAGCCAGCGTCGGAAAATGAAGACGCCGCCAATGGCGGAGATTGAAGAGTTCTTTGCAACGGCCGAGAGACACGAGCAAAAGCGGTTTGCAGAGAAGTACAACTTTGATATTGTTAGAGATATGCCGTTGGAGGGTCGTTACCAGTGGGTTCGTTTACATTGAATGCCAATGAATGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGATCAGCGTGCGTTTTCAGTCTTAGAGAGAGAGAGAGAGAGAGAGTTATGGTATGGAGGGTGAAGGGGGAGAGGAGAGGGTGAGTTTGTTGGGCGTAGTGGTGAGTAGTGCCAACAACTAGACACTGGTGACTGGTGAGGAAGCTAACCTGACACGAGGTAAAACGAAATTTACCGTGCAACTTCAATTCTGGTACGTAGCTCTGGAGAGACGGTGATGCTGGCGGTGATGGGTTTTGGATTTTGTACAGCTAACTGCTTTCTCTTTATATATATGTTGGATACAACAAGCTGGCTTTTCTTTTCTGCAATAACACAATCTCCGATCTCATAGATAGAAGTAGAAGTGTATAATCTTCTTTCTTCAGGCGATGAAGGGNAAAAAATAATTAAATTGGTGTCCTNATTAATATTTGGCATTGTAATTGAGACCGTACCTCTTTCAGTGTTTCCGGTACAATAAGGGAATCAGCTAATTATTATTCTTTAGGTCAGCNTTCATTATTCATTATTAGAAGAATTCATGGATAGAGGATCGAACATCAGTTGTTATTTGGTAATTTTCTATGAAAAGTGTCTTTTGCTCGAGCTTCCTTTTTGGCCGCCCATTTTCCATTGGAAAATGTTTCATGGACACCTCAATGGGTGTATACACCCAGAGAGAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	263140	265169	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007050 cell cycle arrest

cellular_component
GO:0005634 nucleus

molecular_function
GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001645.1	PF02234.14	CDI	152	198	3.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.679
SRR1783600	control	4.658
SRR1783602	moderate drought stress	3.721
SRR1811619	moderate drought stress	3.821

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.300
DRR006520	Root Summer glycyrrhizin high producing strain	9.056
DRR006521	Root Winter glycyrrhizin high producing strain	1.651
DRR006522	Root Winter glycyrrhizin high producing strain	1.528
DRR006523	Root Summer glycyrrhizin low producing strain	6.812
DRR006524	Root Summer glycyrrhizin low producing strain	6.594
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.759
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.831

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.172
SRR2868004	Drought Stress (root)	6.385
SRR2967015	Control (root)	7.760

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.021
SRR9715740	Leaf	1.341
SRR9715741	Leaf	0.911
SRR9715739	Root	2.654
SRR9715742	Root	3.366
SRR9715743	Root	2.337

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.483
SRR8749028	MeJA induced 9h	1.545
SRR8749029	MeJA induced 9h	1.886
SRR8749030	Uninduced	0.521
SRR8749031	Uninduced	0.058
SRR8749032	Uninduced	0.873

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.547
SRR8400027	Control - Root	12.586