Gene detail

Gene detail information of Glyur000006s00001641

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49670.1	0	ARP protein (REF)
NR	XP_003607997.1	0	15-hydroxyprostaglandin dehydrogenase [Medicago truncatula]
COG	YP_003290746.1	9.00E-109	alcohol dehydrogenase zinc-binding domain-containing protein [Rhodothermus marinus DSM 4252]
Swissprot	tr\|Q6WAU0\|PULR_MENPI	1.00E-28	(+)-pulegone reductase
trEMBL	tr\|G7JLA7\|G7JLA7_MEDTR	0	Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313\|EMBL:AES90194.1}

Sequence

Transcript Sequence

>Glyur000006s00001641.1
GTTTCGGCGAAAACAAGATGGAGAGAAACCGACGGTCATCGCTTTCCCTNATTAGGATTTGATTTGAGCACGTTTTTAAACGAACACAGAGATGGAAATTAGCGATAAAATTAAAATTGCATTTATTTCAAACTCGAATATCGAATCCGAATTTGAGACGTAACTACAAACTGTCTTGTTTCCCCACTCTGTTAAAATCGTTAATTACGGGAGCTGCAGAAGAAGAACGATAATGGAGATCAAACCTGGCTTGTCAGCACTCGTCACTGGGGGTGCCTCTGGGATCGGCAAAGGTCTTGTCCTAGCTCTTGCAGAGAAGGGTATATTTATCACAATTGTCGATTTCTCTGAAGAAAAGGGAAGACAAGTCGCAACTCTTGCTGAGAAAATTAACACCAAGTTTCACTCTAAGTTAGAACATCCATCTGTCGTGTTTGTGAAATGCGATGTGACTAACTCAAGGGATCTAGCTGCTGTATTTGAGAAGCACTTTTTAACTTATGGAGGACTAGACATTTGTATTAACAGTGCGGGGATAGGTAATCCTATACCATTCCAGAAGGATCAAACGGATGGCACTCGTTCGTGGAGACACACTGTTAATGTGAATTTGACTGCTGTTATTGATTGCACTCGCCTTGCGATTAAAACTATGGAAGCTGCGAAAAGGCCTGGCGTGATCATCAACATGGGTTCTGCTTCTGGTCTTTATCCAATGTATGCTGACCCTATCTATAGTGGATCTAAAGGTGGTGTTGTTATGTTTTCTAGATCACTTCGTTTATACAAACGTCAAGGAATTCGAGTCAATGTGCTTTGCCCTGAGTTTGTTGAAACCGAGATGGGCTTAAAGATAGATTCCAAATTCATCGGTTTGATGGGGGGCTTTGTACCTATGGAAATGGTGGTGAAAGGTGCTTTTGAGCTCATCATGGATGAAAGTAAAGCCGGTCATTGCCTATGGATTACAAACCGTCGGGGTATGGAGTACTGGCCCACCCCATCAGAAGAAGCAAAGTACTTGACACGTTCTGCACGTTTCAGGAGAATTTCTGAATTCAAAGCTCCGTCAATTAAACTCCCCGAGAGTTTTGAGAAAATAGTTGTTCAGACCTTGACTCACAACTTTCGGAATGCTACCAGCATAGTGAGAGCACCACTGAGATTACCTGTCAAACCAAACTACGTTCTTGTAAAGATAATTTATGCTGGTGTAAATGCTAGTGATGTAAATTTTAGCTCAGGCCGCTATTTTGGTGGCAACAACAATGAGACTGCTTCTCGTCTTCCATTTGATGCAGGATTTGAGGCTGTGGGAATAATTGCCGCAGTTGGGGATTCTGTCACTGACTTAAAAGTTGGTATGCCTTGTGCGTTCATGACTTTCGGAGGCTATGCTGAATTCATAATGATTCCTTCAAAACATGCCCTTCCAGTGCCTAGACCAGATCCAGAAGTTGTTGCCATGCTTACATCAGGATTAACAGCTTCAATTGCTCTAGAAAAGCTTTTGTACACTGCAAAGGCGGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGAGGAACTGGCCAATTTGCTGTTCAGCTAGCAAAATTAGCAGCCAATACTGTGGTTGCAACTTGTGGAGGTGGGGCAAAGGCCAAGCTTCTGAAAGAGTTGGGAGTCGACAGAGTCATAGACTATCGTAGCGAAGATATAAAAACGGTTTTAAGGAAAGAGTTTCCGAAAGGTATTGACATCATCTATGAGTCTGTTGGTGGTGACATGTTAAACTTGTGCTTGAATGCTTTGGCAGTCCATGGACGGCTCATTGTTATTGGCATGATTTCTCAGTATCAAGGAGAAAATGGTTGGACGCCGTCAAAATATCCCGGACTATTGGAGAAGCTTTTGGCGAAGAGTCAAACTGTGGCTGGCTTTTTTCTGGTGCAATATAGTCACATGTGGCAAGAACATCTTGACAGACTATTTAATCTTTACTCTACGGGAAAACTAAAGGTTGCTGTTGATCCAAAGAGATTTACAGGTCTGCATTCTGTTGCAGATGCTGTTGAGTATCTCCATTCAGGCAAAAGTGTTGGAAAGGTGGTTGTCTGCGTGGATCCAACCTTNAGTCATCAAGTGGCCAAATTATGATTAAACACATGTCAAATGACCTCACACTGATAATATTCCATCAGTTTCAAATACAGAAAGAAGTTAAGTTTGCAGCTCTTAGTCGAAAGATTGTTGTCAAANGTTACTGAAAATTAGCTGCAATATTGTCAATGCTTTTTTATTTTTGGATTACTTGTGCGATTGAGTGTTAAAAATCACTAAGAAAAATGGAATTAGGTATACCAGGCTTATATGTTACACTACGGAGCACCTCTCAGTAGCATTTGGCACATGGATAGAACAGGATGAGATGTCCTGTTTCTTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	238194	247851	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001641.1	PF00106.20	adh_short	9	183	8.70E-22
Glyur000006s00001641.1	PF08240.7	ADH_N	316	381	9.10E-10
Glyur000006s00001641.1	PF00107.21	ADH_zinc_N	449	585	2.90E-28
Glyur000006s00001641.2	PF00106.20	adh_short	9	183	8.60E-22
Glyur000006s00001641.2	PF08240.7	ADH_N	316	381	9.00E-10
Glyur000006s00001641.2	PF00107.21	ADH_zinc_N	443	579	2.90E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.208
SRR1783600	control	18.447
SRR1783602	moderate drought stress	18.923
SRR1811619	moderate drought stress	19.099

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.929
DRR006520	Root Summer glycyrrhizin high producing strain	25.559
DRR006521	Root Winter glycyrrhizin high producing strain	27.755
DRR006522	Root Winter glycyrrhizin high producing strain	27.035
DRR006523	Root Summer glycyrrhizin low producing strain	28.438
DRR006524	Root Summer glycyrrhizin low producing strain	28.267
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.249
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.518

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	77.208
SRR2868004	Drought Stress (root)	78.793
SRR2967015	Control (root)	71.882

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.937
SRR9715740	Leaf	47.337
SRR9715741	Leaf	45.400
SRR9715739	Root	11.701
SRR9715742	Root	35.373
SRR9715743	Root	30.899

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.130
SRR8749028	MeJA induced 9h	42.434
SRR8749029	MeJA induced 9h	32.159
SRR8749030	Uninduced	60.003
SRR8749031	Uninduced	50.047
SRR8749032	Uninduced	54.023

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	77.610
SRR8400027	Control - Root	69.902