Gene detail

Gene detail information of Glyur000006s00001640

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G19190.1	autophagy 2
NR	XP_004505205.1	PREDICTED: uncharacterized protein LOC101496989 isoform X1 [Cicer arietinum]
trEMBL	tr\|G7JLA6\|G7JLA6_MEDTR	Autophagy protein {ECO:0000313\|EMBL:AES90193.2}

Sequence

Transcript Sequence

>Glyur000006s00001640.1
ATGTTCCCGTGGAACATTGCGAAATCGGCGGAGGCCATGTTCTCCCGCTGGGCCCTGAAGAGGGTTTGCAAGTTCTTCCTCAAGAAGAAATTGGGGCAGTTCATTCTCGGCGACATCGACCTCGACCAGCTCGACGTTCAACTCACCCAAGGTACCATTCAGCTCACCGATCTCGCTCTCAACGTCGACTTCATCAACGCCAAGTTTAGCAAGACAGCATCCATAATGGTCAAAGAAGGATCAATTGGCAACCTGTTGGTTAAAATGCCTTGGAGTGGTAAAGGTTGTGAGGTTGAAGTGAATGAGCTTGAACTAGTAGTTTCTCCGCGCACAGATAAAATCTCAACCACCGAAGATGAAATTTGTGGTTCTGATGATAATGAAAATTGTCACCTCAAAAATAGCTCAACCAGGACCAAGCATGAAATAGCAGATGATGTTCTGAAGTCAACTTCAATGGATGTTCACGAAGGTGTGAAAACTATTGCAAAGATGGTAAAGTGGTTGCTTACAAGCTTTCATGTGAAAATAACAAACGTAATTGTTGCGTTTGACCCATATTTAGACAATGAAGAGAGGAAAACACGTTGTCATCGTACCTTAGTTCTTCGGGTTTCTGAAATACAATGTGGGACAAGTCTGTCTGAAGATGCTGATTCAAATGTTGATGTCCTTGGAATAAGCCAGTTGACAAACTTTGTAAAGTTTCATGGGGCTGTACTTGAGCTTCTCAAAATAGATGATGAAAATAACCAGTTATCCGTTCAAAATGCATCAAGAGCAGGATGTGGTGAACCTGTTTTGGGATCAAATAATGCTACCGCTACGTGTCCAGTCATGACTGGGAAGCAAGGTGGATTTGGTGGAAATGTAAAATTAAGTATTCCTTGGAAGAATGGTTCTTTGGACATTTGCAAGGTAGATGCAGATGTTTGTGTTGATCCTGTGGTGTTAAGATTTCAACCTAGCACAATTGAATGGCTATTGCAGTCATGGGATACTCTTAAAAATTTGAATAAGGATGGCAAAGGTTGCATGAATGAAGACGCAAGAGGATCTGCCCAATTAAATTCTACATTGTTATGTCCTTCGTCAACTTCAGTTTCTATTACCAATGTCACCAGTGAAATGAAAACTGGTCATGGTAGTGTGCCTGTCGATTCCACTTCCTTTACCCAATCAGAAGGTCCAGAACCCCTTACTGAAGATTTGCTTCCTGCAGCTTGTCTTATATCAGATTGGGTGCCTTTTTCTACCCATCTAAATCGTAAAGATGGTATTCAAGAACTTGATTTTGGGGCAAGTGTGGATCAATTTTTTGAATGTTTTGATGGAATGAGAAATTCTCAATCAGCTTTAGGGAGCAGTGGAGTGTGGAATTGGACATGTTCAGTTTTCAGTGCTATTACTGCTGCATCCAGCCTTGCTTCTGGATCTTTGCATATTCCCTCTGTACAGCAACATATGGAAACCAATCTCAGGGCAACTTTTGCTGGAATATCTGTTGTTTTGTCCTTTTGTGANGATGAACAGAACCATTTTTATGACCCCAAAATTGGTGATACGATTGGACTACAGATTGATTATCTTGGTGCAGAGTGCAACGAAATTGTTGTTGCTTTGACGGTATGTCCNCAAGGTATGACTCTTAATGGAATGGTGAAGCATGTAGAAGTTGCTAATTTCTTGAACATTGGAGGTGATGCTAAAAATCAAAGTGCTTTGGTTCGACACCTACAAGCCAAGGTCCTTGATGCTCTCCCTTTGTCTACCTCTTACAATCTAGATTCAGATGCATTAATTGGGCCAGTTGCGACAGATTTTCCATTTCGAAATATGGACCGCTTACTGAAAGTTACATTGTTTAAAACTTCTGGTATCACCAATTGCAAATTCACAGTGCAATCAAGTTCATCAGATGGTTGCTTGACTGGGATGACATCATTCTCTCTGAACCTGCCCCCATTTATTTTCTGGGTAATCTTTTCTGTAATNAATGTGCTCATAAACCTGCTAAAGGAAGTTGGAAATTCTCTTGAAGTTCATAATAAAGCAAAGGAAATTCTGTCTGAAGCCTCAGATGAAAAGCGTGGATTAGCTCAGACTGATGTGAAGGGAAGTTTTAGTCCCCGTTTGACATCCTTCTCCACAAAAGATTGTTTGCATGGTGATATATCAATTTCTAGTGCAAGAGTAATACTGTGTTTTCCTGTCGAAGGAGTTGGAGATCATGCAGCTTTATTTTCCTGGGAAAAGTTTATNGCTCTTGATTTTACCCCATCGTCACCTCCAAACAAGGGTTGCACCCCAGATGGTAGTCAGAATTCAAATTCAAGTTCAAAGGAAAGATTTCCATTAGTTGCTGCACAATCTCTCCAGTTGAACTTTTGTGATCTAGATATCTACCTGATCATGTCAACAAGTAACAACAGTGGTAGAATCAGCTCCAATGATGTGCAGAATGAGAAATTTTCTGCTAGCTGCTTTCTTTCTATTGCTCGTAGAAGGGGTTGTTTCTCTGTTGTTCGTGTAGTTTGGCAGGGGGGTCAAGTGACTGGTCCTTGGATTGCTAAGAAAGCTAGATTATTTGCTAATTCAGAGCAATCAAGGGNAAAAGATGATATTACAGGAAGCGGGCATGAGTTTGCATCTGCATCAACAGTGAAAGATTTGGAAGATTGGAAATCTCAAACTCAACAAGAGATGATTCTAAGCTCATCATTTCTCACGCATGTCCATCTATCTCAAGTTGTGATTAATGTGAATGATTCTCAATACAAAGGCATACATCACCTTTTACTTCAGATGCTCAATGCAATGACATGTGTGACTTCTCAGGAAGCCATTGTTGAGAAAGAATCTTCTGTCTCACAATCATCAGTATTTGTGGAATGTGATTCTGTAGAAATTCTTATTAGTAGGGATACATCTGAGAGTATCCAAAGCCCAATCAAGAGTGAGCTTCCCGGACTGTGGCATCAATTCAAGCTGAAGGTTCAAAAGTTTGAGGTGCTGTCTGTCACTAATACCGGTGGTGTTAAGGCTGCTAGCTTCTTCCGATTAACCCATGGTGAAGGGAAGTTGTANGGGTTTGTCACCGGAGTTCCTGATCATGAGTTTCTTCTGATTACTTGTAACAACTCCTCTGTGAAGCGAGGTAATGGAGGAGGTTCTAATGCATTATCTTCTAGATGTGCTGGTTCTGATATCATATATCTGTCTGACCCAGAGATTTCCCAGAATATTACATCTATAGCTGTCAGTTGTGGCACAGTTATTGCTGTAGGTGGTCGTTTGGATTGGTTTGATGTAATATCATCCTTTTTCAGTTTGCCTGCTTCTAATACTAAAGATGCAGGTGATCCTAGTATTTCAAAGAGGGAACAGAAAATCTCTTACACGACTTATTTTGTTCTCAGCTTGATTGATATTGCTTTGAGTTATGAGCCCTATATGAAAAATCTGGTGGTTCAGAGTGAGGTCCTCAATTCAGTGTCTGGCTCTCCTTGTGGCAAGGAAGATATGGATGAACAATGTGTTTCTTGTCTGTTGGCTGCATCCAGCTTGACTCTTTCAAATTCATCTATGTCAGATTCAGTTGAAAATGTTTTCCACATCAGAGTGCAAGACCTGGGGCTTCTGCTTCATTTAATATCAGAGCTGAATTCTCTCCCTGGCACTTACAGTGTAGAACATCTTCAAAAAGCTTATGTTAAAGTTGCTCAGGAGGCTTTTATGGAGGCAATTTTGAAAACGAACTGTGCTAGTGGTCTTCTTTGGGAACTTGAATTATCTAAATCTCACCTTTATGTGGAAACTTGCTATGATACCACTGCTACTCTTATTCGTTTGGGTGCTCAACTTCAGCAATTATTTGCCCCTGACGTGGAGGAATCCATTGTGCATTTNCAGAATAGGTGGGATAATGTTCAACAAGCGCAGCAAAGGAATGAATTTAATAATGAAAGTAAGAATCTCAGATGTGACACGATGGCTTCAACTTCTGAACAGTGCTCCCCAAAAACATTTTCAAAGGATGGATCTAGTATCGCTGGCTTGATGGATGAAATATGTGAAGATGCATTTCAAGTAAATAACAATAATGAACGTCAATCTTATTCTTTTGAATCNGGTTTTTTTATGCCACTTGATGGAAACTTAATTGAGGTTGGTAAGATGAATTCGGATGAGCCTGAAGTTTTCTCTCCTGAATTAACTTTGACTGAGTTGGTGCCTGTAATAGGACCAGAAGGCAGTCACACTTCGTTTCTGCAAGACGGTTGCTTTCCAGAGATTATAGAAAGCTATTGTTTGTCTGACTTATGCCCTCTCTCAGAGCTATCTATAGATATACATTCTAATGAGCTTTCTAGACCCACACTGAGGAATGTGGAACATAGAGAGATTGAAAGAGGAAGTGGTGGATGGTATGGAGGCACCACTTTAAAAGTATTAGAAAACCACATTTCAGAGGAAAATGGAAAAACTGGACTGACAAAAGCCGTAGATCATGGCATGCTTCTATCTGATGATTGTCCGTCTCACAGTGAGACTTGTGGACGTGTAATTTTTAAGAAAATTGATATAAGATGGAAAATGTATGGTGGTTCTGACTGGCTTGATTCAGGTAAAAATGGACAGCATTCTGGGAGGAAGACATCTGTTTGTATGGAATTTGCATTGTCTGGGATGAAATTTCAGTATGATATATTTCCAGTTGGTGGACTACATGTATCNAAGATGTCTCTGTCTGTTCAAGATTTTTATCTCTATGACAGAAGCCAAGATGCACCTTGGATACTGGTGCTAGGATATTATCACTCAAAAGGCCATCCGAGGGAATCTTATTCAAGAGCATTTAAGTTGGACTTGGAGGTAGTTAGACCAGATCCTCTAACTCCGCTTGAGGAGTACAGGTTAAATGTTGCTTTTCTACCTATGCTATTACATCTACATCAGTGCCAGCTTGATTTTCTTGTTGATTTCTTTGGGAGAAAAAGCTCATTAAATCATCAGTTTCCTAATAATTGTCAAGATTTGGAGGGTTCAAAATCTTTGCCTGAGGAGAGTAAAGATTCTGCATGTCATTCAATTGCACAAGAAGCATTGCTTCCTTACTTCCAGGCAAGTGGTAAGCTAGATATATGGCCTATTATTGTTCGGGTGGATTACAGTCCCAATCATGTAGATCTAGCAGCATTACGGCGTGGGAAGTATGTAGAACTTGTAAATCTTGTCCCTTGGAAGGGGGTTGAGCTTAACCTGAAACATGTTCATGCTTCTGGCATCTATGGTTGGGGCAGTGTTTGTGAAACAGCTTTAGGGGAGTGGTTGGAAGATATATCTCAGAATCAGATTCATAAAATACTGCNGGGCCTTCCTACTGTACGATCATTAATTGCAGTTGGGGCTGGTGCTGCTAAGCTTGTTTCATCACCAGTAGAGAACTACAAGAAGGAGCGGAGAGTGCTCAAGGGTTTGCAAAGAGGTACAATTGCATTTCTACGAAGTATTTCTGTTGAAGCCGTTGGACTTGGAGTTCATCTAGCTGCTGGGGCCCATGACTTTCTTCTCCAAGCAGAATATAGTCTTTCAAGCATACCTTCTCCAGTTCCTCTGCCTGTGAAAGATAAATCAAAGATAGACATTCGGTCCAATCAACCTAATGATGCCCAACAAGGAATTCAACAGGCTTATGAGAGTCTCAGTGATGGGTTGGGAAAATCTGCTGCTGTGTTAGTTCAGAACCCCTTGAAAAAGTTCCAGCGTGGCTCAGGTGCAGGACCTGCCTTGGCTGCTGCTGTTCGAGCAGTTCCTGCAGCTGCCATAGCTCCCGCTTCAGCTTGCGCAAGTGCTGTACACTATACTCTTCTTGGATTCAGAAATAGCCTTGATCCTGAACGTAAAAAAGAGTCCATGGAGAAATATTGTCCGNCACAACCCTGGGAAGAAGACTGATTAATGATTATAATGTGAGGATTGAGTTGTTGATGCCCTTACTTCACTGACCAAGGAGATCCAGAGGAGCTTTTTTTCTTTTTCTGTTTCTCGTCTGCATGGCATTCTCCTGTGTATCATCTGCAGATGTACAGTAGCGGAACCAGGCAGCTGATTCTTTTATATCGGAGTAATTGTATATACTGTAAATATGGATGGTGCTTCTTAATCCTATTCTTGTTCAAGCGGATGTCACTATAGGTGTAATGACCCCATTTGTTTAGTTAGATGTACATANTAAAGTAAAATAATGTCATTCTT

Protein Sequence

>Glyur000006s00001640.1
MFPWNIAKSAEAMFSRWALKRVCKFFLKKKLGQFILGDIDLDQLDVQLTQGTIQLTDLALNVDFINAKFSKTASIMVKEGSIGNLLVKMPWSGKGCEVEVNELELVVSPRTDKISTTEDEICGSDDNENCHLKNSSTRTKHEIADDVLKSTSMDVHEGVKTIAKMVKWLLTSFHVKITNVIVAFDPYLDNEERKTRCHRTLVLRVSEIQCGTSLSEDADSNVDVLGISQLTNFVKFHGAVLELLKIDDENNQLSVQNASRAGCGEPVLGSNNATATCPVMTGKQGGFGGNVKLSIPWKNGSLDICKVDADVCVDPVVLRFQPSTIEWLLQSWDTLKNLNKDGKGCMNEDARGSAQLNSTLLCPSSTSVSITNVTSEMKTGHGSVPVDSTSFTQSEGPEPLTEDLLPAACLISDWVPFSTHLNRKDGIQELDFGASVDQFFECFDGMRNSQSALGSSGVWNWTCSVFSAITAASSLASGSLHIPSVQQHMETNLRATFAGISVVLSFCXDEQNHFYDPKIGDTIGLQIDYLGAECNEIVVALTVCPQGMTLNGMVKHVEVANFLNIGGDAKNQSALVRHLQAKVLDALPLSTSYNLDSDALIGPVATDFPFRNMDRLLKVTLFKTSGITNCKFTVQSSSSDGCLTGMTSFSLNLPPFIFWVIFSVXNVLINLLKEVGNSLEVHNKAKEILSEASDEKRGLAQTDVKGSFSPRLTSFSTKDCLHGDISISSARVILCFPVEGVGDHAALFSWEKFXALDFTPSSPPNKGCTPDGSQNSNSSSKERFPLVAAQSLQLNFCDLDIYLIMSTSNNSGRISSNDVQNEKFSASCFLSIARRRGCFSVVRVVWQGGQVTGPWIAKKARLFANSEQSRXKDDITGSGHEFASASTVKDLEDWKSQTQQEMILSSSFLTHVHLSQVVINVNDSQYKGIHHLLLQMLNAMTCVTSQEAIVEKESSVSQSSVFVECDSVEILISRDTSESIQSPIKSELPGLWHQFKLKVQKFEVLSVTNTGGVKAASFFRLTHGEGKLXGFVTGVPDHEFLLITCNNSSVKRGNGGGSNALSSRCAGSDIIYLSDPEISQNITSIAVSCGTVIAVGGRLDWFDVISSFFSLPASNTKDAGDPSISKREQKISYTTYFVLSLIDIALSYEPYMKNLVVQSEVLNSVSGSPCGKEDMDEQCVSCLLAASSLTLSNSSMSDSVENVFHIRVQDLGLLLHLISELNSLPGTYSVEHLQKAYVKVAQEAFMEAILKTNCASGLLWELELSKSHLYVETCYDTTATLIRLGAQLQQLFAPDVEESIVHXQNRWDNVQQAQQRNEFNNESKNLRCDTMASTSEQCSPKTFSKDGSSIAGLMDEICEDAFQVNNNNERQSYSFESGFFMPLDGNLIEVGKMNSDEPEVFSPELTLTELVPVIGPEGSHTSFLQDGCFPEIIESYCLSDLCPLSELSIDIHSNELSRPTLRNVEHREIERGSGGWYGGTTLKVLENHISEENGKTGLTKAVDHGMLLSDDCPSHSETCGRVIFKKIDIRWKMYGGSDWLDSGKNGQHSGRKTSVCMEFALSGMKFQYDIFPVGGLHVSKMSLSVQDFYLYDRSQDAPWILVLGYYHSKGHPRESYSRAFKLDLEVVRPDPLTPLEEYRLNVAFLPMLLHLHQCQLDFLVDFFGRKSSLNHQFPNNCQDLEGSKSLPEESKDSACHSIAQEALLPYFQASGKLDIWPIIVRVDYSPNHVDLAALRRGKYVELVNLVPWKGVELNLKHVHASGIYGWGSVCETALGEWLEDISQNQIHKILXGLPTVRSLIAVGAGAAKLVSSPVENYKKERRVLKGLQRGTIAFLRSISVEAVGLGVHLAAGAHDFLLQAEYSLSSIPSPVPLPVKDKSKIDIRSNQPNDAQQGIQQAYESLSDGLGKSAAVLVQNPLKKFQRGSGAGPALAAAVRAVPAAAIAPASACASAVHYTLLGFRNSLDPERKKESMEKYCPXQPWEED

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	224300	235106	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006914 autophagy

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001640.1	PF12624.2	Chorein_N	22	119	6.60E-10
Glyur000006s00001640.1	PF09333.6	ATG_C	1880	1976	3.30E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.344
SRR1783600	control	6.386
SRR1783602	moderate drought stress	8.219
SRR1811619	moderate drought stress	8.110

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.257
DRR006520	Root Summer glycyrrhizin high producing strain	6.179
DRR006521	Root Winter glycyrrhizin high producing strain	6.946
DRR006522	Root Winter glycyrrhizin high producing strain	6.866
DRR006523	Root Summer glycyrrhizin low producing strain	8.168
DRR006524	Root Summer glycyrrhizin low producing strain	8.219
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.629
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.577

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.731
SRR2868004	Drought Stress (root)	26.437
SRR2967015	Control (root)	27.495

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.380
SRR9715740	Leaf	13.240
SRR9715741	Leaf	23.443
SRR9715739	Root	2.560
SRR9715742	Root	15.897
SRR9715743	Root	14.193

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.631
SRR8749028	MeJA induced 9h	18.491
SRR8749029	MeJA induced 9h	15.882
SRR8749030	Uninduced	15.772
SRR8749031	Uninduced	38.816
SRR8749032	Uninduced	28.879

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.215
SRR8400027	Control - Root	19.694