Gene detail information of Glyur000006s00001638 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G35525.1 | 8.00E-30 | PLAC8 family protein |
| NR | AES90190.2 | 3.73E-86 | fruit weight 2.2 protein [Medicago truncatula] |
| Swissprot | tr|B6TZ45|CNR1_MAIZE | 3.00E-50 | Cell number regulator 1 |
| trEMBL | tr|G7JLA3|G7JLA3_MEDTR | 1.00E-86 | Fruit weight 2.2 protein {ECO:0000313|EMBL:AES90190.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00006 | 212800 | 213525 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000006s00001638.1 | PF04749.12 | PLAC8 | 58 | 157 | 3.40E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.069 |
| SRR1783600 | control | 0.069 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.207 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.096 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.166 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.354 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.353 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.745 |
| SRR2868004 | Drought Stress (root) | 43.310 |
| SRR2967015 | Control (root) | 26.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.051 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.075 |
| SRR9715739 | Root | 0.088 |
| SRR9715742 | Root | 0.354 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.226 |
| SRR8749028 | MeJA induced 9h | 3.013 |
| SRR8749029 | MeJA induced 9h | 4.751 |
| SRR8749030 | Uninduced | 2.711 |
| SRR8749031 | Uninduced | 0.157 |
| SRR8749032 | Uninduced | 1.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.906 |
| SRR8400027 | Control - Root | 2.496 |