Gene detail information of Glyur000006s00001636 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G15680.1 | 4.00E-60 | Calcium-binding EF-hand family protein |
| NR | XP_004505210.1 | 1.28E-111 | PREDICTED: uncharacterized protein LOC101498518 [Cicer arietinum] |
| COG | YP_007118813.1 | 9.00E-11 | putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q9ZQE6|CML1_ARATH | 1.00E-74 | Calmodulin-like protein 1 |
| trEMBL | tr|B7FMR4|B7FMR4_MEDTR | 2.00E-110 | Uncharacterized protein {ECO:0000313|EMBL:AFK48608.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00006 | 207200 | 207853 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000006s00001636.1 | PF13499.1 | EF-hand_7 | 79 | 138 | 9.50E-15 |
| Glyur000006s00001636.1 | PF13499.1 | EF-hand_7 | 150 | 210 | 1.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.016 |
| SRR1783600 | control | 1.020 |
| SRR1783602 | moderate drought stress | 2.214 |
| SRR1811619 | moderate drought stress | 2.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.820 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.770 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.604 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.212 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.240 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.089 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.037 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.392 |
| SRR2868004 | Drought Stress (root) | 8.797 |
| SRR2967015 | Control (root) | 9.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.272 |
| SRR9715740 | Leaf | 14.714 |
| SRR9715741 | Leaf | 8.451 |
| SRR9715739 | Root | 1.161 |
| SRR9715742 | Root | 6.662 |
| SRR9715743 | Root | 5.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.108 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.279 |
| SRR8749030 | Uninduced | 0.292 |
| SRR8749031 | Uninduced | 0.234 |
| SRR8749032 | Uninduced | 0.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.767 |
| SRR8400027 | Control - Root | 1.777 |