Gene detail

Gene detail information of Glyur000006s00001631

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G19240.1	Vacuolar import/degradation, Vid27-related protein
NR	XP_004505213.1	PREDICTED: protein CYPRO4-like [Cicer arietinum]
Swissprot	tr\|P40781\|CYPR4_CYNCA	Protein CYPRO4
trEMBL	tr\|G7JL95\|G7JL95_MEDTR	Vacuolar import/degradation, VID27-like protein {ECO:0000313\|EMBL:AES90182.1}

Sequence

Transcript Sequence

>Glyur000006s00001631.1
ATCCACGCCCAAAAGCAACAATAGAGCCGCGTACCCGAGTAACCGGTAGCAATAACGCTATAAATAAAACCGTTAACGGATTCCCAACACTGAATCCCAAAAATCGAATCAAAAAATCAAATCCATTTTGTTTGATGGGTACATCTCAGAGCCGCGAAGGCCTGCAAGTCACTGACTCCGATTCCGATTACGATGAACAACAACATGAAGAAGAAGAAGAAGATGAAGAAGAGCAACAGCAACGGCAATACCAGGACGCACAAACTTCCTCTAGATCCCCATCGTCCCAGCTCGACGAAGTAGACGCCAGGCTCAAAGCTTTGAAACTCAAATATTCCTCTTCTACTTCTTCACAGCCCCAATCCCAAACCCCTCTTNCCAAAAACGCCGTCAAGCTTTACCTTCACATCGGCGGCAACACTCCCAATGCCAAATGGATCCTCTCCGACAAACGTACTTCCTATTCCTTCCTCAAATCCTCCGAAACCNACGACGACGACGACGAAAACCACGNCGATGAAAACGAGGACAGTGAGGGTGACTGGTTTCTCAAGGTGGGTTCTAAGGTTCGCGCTAGGGTTTCCAGCGAATTGCAATTGAAGATGTTCGGCGATCAGCGCCGCGTCGATTTCGTCTCCAACGGCGTTTGGGCCCTAAAATTCCCCACCGACGAGTCCTACCGGAAATTCGTGAGCGAATTCCAGGACTGCGTCTTCGAGAACGTGTACGGCCTCTCCCCAACCGAGGACAACAAGATCAAGGTCTACGGCAAGGAGTTCATCGGGTGGGTGAAACCCGAAGCCGCCGACGACTCTGTCTGGGAAGACGCAGTCTCCGACGACGGCTCCGGGAAGAGCCCCGAACCCGTTCGGTCAAGGGATAATTTGATGGAGGAGTTCGAAGAGGCCGCGAACGGTGGTGTCCAAACCCTATCGCTNGGCGCACTCGACAACAGTTTCCTCGTCAACGACACCGGTGTCCACGTCTACCGGAACTTCAACCGAGGGATTCACGGCAAGGGCGTCGCCGTGAAATTCGACGGCGGCGGGAGCGGTAGTCTCCGTCAAGAGACGCCGCCGCCGAACAAGGCGCTTTTGATGAGAGCAGAGACCAACATGATGCTGATGAGTCCCCTTAGCAGTGGGAAGCCCCACGCCTCGAAGCTTCGCCAGCTTGACATCGAGAGCGGGAAGATCGTGACAGAGTGGAAGTTCGAGAAGGACGGTGCCGACCTCACGATGAGGGATATCACAAATGATGCGAAGGGATCACAATTGGACCCTTCGGAATCCACGTTTTTGGGGTTGGATGATAACAGGCTGTGTCAATGGGACATGCGTGATAGGAAAGGGATGGTTCAGAACATCGCCACCGCTGGTTCTTCGCCGGTGTTGAATTGGAACCAGGGGCACCAGTTCTCGAGAGGGACNAACTTTCAGTGCTTTGCAACTACTGGAGATGGTTCCATAGTTGTGGGATCCCTTGATGGGAAGATAAGGTTGTATTCAAAGACTTCGATGAGGCAGGCTAAGACTGCTTTCCCTGGGCTTGGTTCTCCTATTACCAGCGTTGATGTCACTTTTGATGGAAAGTGGGTGCTGGGCACCACTGATACTTATTTGGTGCTGATTTGCACCTTGTTCACTGATAAAGATGGGAAGACGAAGACTGGGTTCAGTGGTCGCATGGGAAACAGGATACCTGCTCCCAGACTGTTGAAGCTCACTCCCCTCGATTCTCATTTGGCTGGCACGAGCAATAAGTTCCATGGTGGCCATTTCTCATGGGTCACTGAGAATGGTAAACAAGAACGCCACCTTGTTGCGACTGTGGGCAAGTTTAGTGTGATATGGGATTTTCAGCAGGTAAAGAACAGTGCTCATGAATGTTACAGGAATCAACAAGGGCTGAAGAGCTGTTACTGTTATAAGATAGTATTGAAAGACGAGTCAATCGTAGAATCACGATTTATGCACGACAATTTTGCTGTTAGTGACTCCCCCGAAGCTCCATTGGTGGTAACAACTCCTATGAAAGTCAGCTCTTTCAGCCTCTCTGGAAAGCGACATGGTTAAACTTCGTTTACCTTTTTTTTCTTCTTTCTCTTCCCTATTTTAAGGTTTCAAATTTCTAATCTTAGGAGTGCCTTTGAACAAAGGATTGCTTGTATTCAAGTCTCTGTTATTATTATTTTTTTCATTTAGAGGTTTCAAATTTCTAGTTTTAGGAGTGCCTTTGAACAACGGATTGCTTGTATTCAAGTCTCTGTGATACTGTTTGTTCTTCTGTACAGAAAATTTTAGGTTGCTCTGTATCTCTTTTCTTATATTGTGGTCATTACAAGTTTGGGTTTGCAAAGATTTGTGGACTGTCCTTTTCTGTTTCCAAATAAAAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	192257	196354	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001631.1	PF08553.5	VID27	171	587	2.00E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.090
SRR1783600	control	29.243
SRR1783602	moderate drought stress	33.287
SRR1811619	moderate drought stress	32.743

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	62.064
DRR006520	Root Summer glycyrrhizin high producing strain	60.157
DRR006521	Root Winter glycyrrhizin high producing strain	21.336
DRR006522	Root Winter glycyrrhizin high producing strain	21.403
DRR006523	Root Summer glycyrrhizin low producing strain	76.674
DRR006524	Root Summer glycyrrhizin low producing strain	75.770
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.975
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.382

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.512
SRR2868004	Drought Stress (root)	56.892
SRR2967015	Control (root)	60.645

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	80.262
SRR9715740	Leaf	51.810
SRR9715741	Leaf	90.193
SRR9715739	Root	64.697
SRR9715742	Root	122.546
SRR9715743	Root	107.641

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.855
SRR8749028	MeJA induced 9h	32.540
SRR8749029	MeJA induced 9h	21.564
SRR8749030	Uninduced	21.001
SRR8749031	Uninduced	37.232
SRR8749032	Uninduced	35.772

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.828
SRR8400027	Control - Root	44.829