Gene detail information of Glyur000006s00001628 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G19260.1 | 1.00E-93 | LAG1 homologue 2 |
| NR | XP_004505216.1 | 1.59E-180 | PREDICTED: LAG1 longevity assurance homolog 2-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9LJK3|LAG12_ARATH | 2.00E-129 | LAG1 longevity assurance homolog 2 |
| trEMBL | tr|G7JL86|G7JL86_MEDTR | 7.00E-167 | LAG1 longevity assurance-like protein {ECO:0000313|EMBL:AES90173.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00006 | 180374 | 185477 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000006s00001628.1 | PF03798.11 | TRAM_LAG1_CLN8 | 67 | 260 | 6.10E-34 |
| Glyur000006s00001628.2 | PF03798.11 | TRAM_LAG1_CLN8 | 67 | 260 | 6.10E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.169 |
| SRR1783600 | control | 7.154 |
| SRR1783602 | moderate drought stress | 4.319 |
| SRR1811619 | moderate drought stress | 4.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.679 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.711 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.778 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.908 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.071 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.354 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.120 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.934 |
| SRR2868004 | Drought Stress (root) | 4.150 |
| SRR2967015 | Control (root) | 3.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.576 |
| SRR9715740 | Leaf | 1.515 |
| SRR9715741 | Leaf | 2.052 |
| SRR9715739 | Root | 2.377 |
| SRR9715742 | Root | 4.214 |
| SRR9715743 | Root | 3.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.503 |
| SRR8749028 | MeJA induced 9h | 4.893 |
| SRR8749029 | MeJA induced 9h | 6.956 |
| SRR8749030 | Uninduced | 2.358 |
| SRR8749031 | Uninduced | 1.407 |
| SRR8749032 | Uninduced | 2.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.146 |
| SRR8400027 | Control - Root | 7.259 |