Gene detail

Gene detail information of Glyur000006s00001623

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G15620.1	nitrite reductase 1
NR	XP_003607969.1	Ferredoxin-nitrite reductase [Medicago truncatula]
COG	YP_007118319.1	assimilatory nitrite reductase (ferredoxin) precursor [Oscillatoria nigro-viridis PCC 7112]
Swissprot	tr\|P38500\|NIR_BETPN	Ferredoxin--nitrite reductase, chloroplastic (Precursor)
trEMBL	tr\|G7JL79\|G7JL79_MEDTR	Ferredoxin-nitrite reductase {ECO:0000313\|EMBL:AES90166.1}

Sequence

Transcript Sequence

>Glyur000006s00001623.1
GCCCCTTACAAATAGTTTTATTAGTACAATCAATCAATCAATCCTTTTTATCACAAAAACACACAAAGGCGACCCTTAGCCATAACCAAAGGTCGATGAAGGTGAGAAAGAAGCTCTTCCTTACTCGTAAGGTCCCCACTTCACTCCTCTCTTCTCATCCTACAAAAATGTCATTACCACCACACCCTCCTCCTCCTCATTCCCAACACACTCTTCTTCTTCTTCTTCTTCACAATAAGCCATGTCTTCTTTCTCTGTTCGATTTCTCACCCCTCCTACGTGCTCTCTCCCCAAGAGTAAGACATGGCTACTATCTGCTGCCACGCCCTCAGTGGCTCCGGTTTCTGATCCAGAGGTGGAGGCCTCGAGGTTGGAGCCTAGAGTGGAGGAAAGAGATGGGTACTGGGTCTTGAAAGAAGAGTACAGGGGAGGCATCAATCCTCATGAAAAAGTGAAGCTTGAGAAAGACCCCATGAAGCTTTTCATGGAAGGAGGGCTTGATGAATTGGCTAAGTTGTCTCTTGAGGAAATTGAGACCTCTAAGCACACTAAGGATGATATTGATGTCAGGCTCAAATGGCTTGGCCTTTTTCATAGGAGAAAACATCACTANGGTAGATTTATGATGAGGCTGAAACTTCCAAATGGGGTAACAACGAGTGCCCAGACACGATACCTGGCGAGTGTGATCAAGAAGTACGGGAAAGATGGGTGTGCCGATGTGACAACGAGGCAGAATTGGCAAATCCGAGGTGTGGTGCTACCTGATGTCCCAGAAATTCTTAAAGGCCTCGCTGAGGTTGGGTTGACGAGTCTGCAGAGTGGCATGGACAACGTGAGGAACCCTGTGGGTAACCCTCTTGCTGGGTTTGACCCTGATGAGATTGTTGATACCCGACCCTACACCAACTTGTTGTCCCAATTCATCACTGCCAATTCACTTGGCAACCCAACCATTTCAAACTTGCCAAGGAAGTGGAATGTATGCGTTGTGGGTTCCCATGATCTGTTCGAGCATCCCCATATCAATGATCTGGCTTACATGCCTGCTAATAAGGATGGCCGTTTTGGATTCAACTTATTGGTGGGTGGTTTCTTCAGTCCCAAGCGATGTGCAGAAGCAGTTCCACTTGATGCATGGGTCTCCTCAGATGATGTGATCCCACTTTGTAAAGCTGTCCTTGAGGCCTATAGGGACCTTGGCACCAGGGGGAATAGACAGANAACCAGAATGATGTGGTTGATTGATGAATTGGGAATAGAAGTGTTCAGGTCAGAGGTGGAAAAAAGAATGCCAGGGAAGCAGTTGGAGAGAGCATCCCAAGAAGATCTGGTTCAGAAACAATGGGAGAGAAGGGATTACTTAGGTGTTCATCCACAGAAACAGGAGGGCTTAAGCTATGTTGGGATTCACATCCCAGTTGGTAGAATCCAAGCAGATGAGATGGATGAGCTGGCCCNTTTGGCAGATGAATATGGAACTGGTGAACTAAGGCTCACTGTGGAGCAAAACATAATAATCCCCAATGTGGAAAACTCAAAGATTGATGCCTTGCTCAAAGAACCTCTCTTGAAGGAGAAATTTTNACCTGAACCTTCCCTTCTAATGAAAACANTGGTGGCATGCACTGGTAACCAGTTTTGTGGGCAAGCCATAATTGAGACAAAGGCAAGGGCTTTGAAAGTGACNGAGGAAGTGGAGAGGCAAGTGGCAGTGACTAGGCCTGTGAGAATGCATTGGACTGGCTGTCCCAACACCTGTGGGCAGGTGCAGGTTGCTGATATTGGTTTCATGGGGTGCATGACTAGGGACCAGAATGGTAAGGTCACTGAGGGTGTGGATATTTTCCTGGGTGGGAGAATTGGAAGTGATTCACATCTGGCTGAGGTGTATAAGAAGGGTGTCCCTTGCAATGACTTGGTGCCTGTTGTAGTAGACATAATGGTAAAATATTTTGGAGCTGTCCAAAGGAATAGGGAAGANGGGGATGATTAAATTTTATAGGTCTTTGGTAATTTTTGTTTCAAGATTCAATCTAGTCTAATGTCTCNAGACAAAAACATCAGTAAAATAAAACCATAAGGGATGATTAAGTGATCTGCTGCAGCACATATGCCCATGTACATTTGGATAAGAAACTTTTCTTTACCGGTTTCCAAGTTATATACACCTTTTTTTTATTATATATTTCTTGTTATCTTCTCTTCCATTTCAAATTTGTAATTTAAATTTATCTATTTTATCTTTCACAACAATTAGTTGTTAATTCCAAGTTTGTAATTTAAATTTGTAACTTAAATTTGTAAAATATTCATTATTGTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	108562	112101	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00366	nirA	EC:1.7.7.1	Nitrogen metabolism	map00910

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0020037 heme binding

GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001623.1	PF03460.12	NIR_SIR_ferr	121	187	9.30E-18
Glyur000006s00001623.1	PF01077.17	NIR_SIR	196	353	2.50E-32
Glyur000006s00001623.1	PF03460.12	NIR_SIR_ferr	378	441	8.10E-20
Glyur000006s00001623.1	PF01077.17	NIR_SIR	458	578	7.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.265
SRR1783600	control	2.279
SRR1783602	moderate drought stress	33.297
SRR1811619	moderate drought stress	33.065

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.968
DRR006520	Root Summer glycyrrhizin high producing strain	33.977
DRR006521	Root Winter glycyrrhizin high producing strain	58.075
DRR006522	Root Winter glycyrrhizin high producing strain	56.944
DRR006523	Root Summer glycyrrhizin low producing strain	25.677
DRR006524	Root Summer glycyrrhizin low producing strain	25.586
DRR006525	Leaf Summer glycyrrhizin high producing strain	74.072
DRR006526	Leaf Summer glycyrrhizin high producing strain	74.002

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	102.527
SRR2868004	Drought Stress (root)	58.602
SRR2967015	Control (root)	83.378

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	113.334
SRR9715740	Leaf	86.020
SRR9715741	Leaf	61.691
SRR9715739	Root	26.502
SRR9715742	Root	36.031
SRR9715743	Root	33.654

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1133.570
SRR8749028	MeJA induced 9h	1611.985
SRR8749029	MeJA induced 9h	1121.354
SRR8749030	Uninduced	651.682
SRR8749031	Uninduced	873.359
SRR8749032	Uninduced	721.195

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.370
SRR8400027	Control - Root	13.504