Gene detail

Gene detail information of Glyur000006s00001622.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G49710.1	fucosyltransferase 12
NR	XP_004505222.1	PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q9FX97\|FUT12_ARATH	Putative fucosyltransferase-like protein
trEMBL	tr\|Q5DTC8\|Q5DTC8_MEDSA	Alpha 1,3 fucosyltransferase {ECO:0000313\|EMBL:AAL99371.1}

Sequence

Transcript Sequence

>Glyur000006s00001622.1
GTTTGCCTATTGCTGATTGGTTTCAGTGAGTTAGTTCCTTCAGCAGAGCACCCCCGTAGACTTTGAATATGGAAAATCTCTGCCTCATCGGTGACTAAACTGCAAAGTCTGCAAATTTATTATTTTCTTCGTCGAGGGAGTCGCAATTACAAAGCTTCAACCCTCGACCCTTCTTTTTTCTTCCTCTTCCTTTAACAAGCAACCTCATGGAATCGTGGCTATAACGCCACCCTTTTCAACTACTTCCCCAAGCTTTGGTTTTTCCGTTCTCTATCGCAGTTTCTGGGTTAAAAAAAAAGTGGGAAATTGAGGAATTGGAAGTTGGAGGTAGAATCGATTGATGGGTCTCGTTTGGAATCAACGAGGCTCGAGAACAGAAACGACCCAAGAAGGTTTACCATGTTCCGTTTCCACAGGTGGTGGGGTTGGTGCAGTGGCTCCAAAGAAGAGATGGTCTAACCTAATGCCTCTAGTTGTGGCCCTTGTGGTCATTGCCGAGATCGCGTTTCTGGGTAGGTTGGATATGGCGAAGAACGCAGCCATGGTGGCTGACTTGTTCTACCGTTCCCGTGCGGTGGTAGAAGGTGATGATATGGGGTTAGATATGGTGGTGGCTGGTGATCGGAACTCGGAACCTGAGAGCTGTGAGGAATGGTTGGAGAGGGAGGATGCTGTCACATATTCAAGGGACTTTGCCAAGGAACCAGTTTTTGTTTCTGGAGCTGAACAGGAGTGGACATCGTGTTCAGTGGGATGCAAGTTTGGGTATAATGGGGACAGGAGACCTGATGCTGCATTTGGGTTACCTCAACAAGATGGGACAATAAGTGTTCTGCGATCAATGGAATCAGCACAATACTATGCAGAGAACAATATTGCCATGGCACGACGGAGGGGATATAGAATTGTAATGACAACCAGTCTATCATCTGATGTGCCTGTTGGATATTTTTCATGGGCTGAGTATGACATCATGGCACCGGTAAAGCCAAAAACTGAAAAAGCTCTTGCAGCTGCATTCATTTCTAATTGTGGTGCTCGAAATTTCCGGTTGCACGCTCTTGAAGCCCTTGAAAAAGCAAACATCTTGATTGACTCTTATGGCGGTTGTCATAGGAACCGTGATGGAAGAGTGGACAAAGTGGAAACCCTGAAGCGCTACAAATTTAGCTTAGCATTTGAAAATTCTAATGAGGAGGATTATGTAACCGAAAAATTCTTCCAATCCCTTGTTGCAGGAACTATCCCCGTGGTTGTTGGTCCTCCAAATATTCAAGATTTTGCTCCTTCTCCCAGTTCAATTTTACATATTAAAGAAATAGAAGATGTTGAATCTGTTGCCAAGACCATGAAATACCTAGCAGAAAACCCGGAAGCATATAATCAATCATTGAGGTGGAAGTATGAGGGCCCATCTGATTCCTTCAAGGCACTAGTGGATATGGCAGCTGTACATTCATCTTGCCGCCTTTGTATTCACTTGGCCACAGTGAGTAGAGAGAAGGAAGAAAAGAGCCCAGGCTTCAAGAATCGCCCTTGCAAGTGCACTCGAGGGTCAGATACTGTGTATCATATCTATGTGAGAGAGAGGGGAAGATTTGATATGGAGTCCATTTACCTGAGGTCTAGCAATTTAACTCTGGAAGCCTTGAAGTCTGCTGTTGTCATGAAGTTCACATCCCTGAATCATGTTCCTATATGGAAGCCAGAGAGACCTGAAATTCTAAGAGGGGGCAATGAGTTAAAAGTTTACAAGATATACCCGGTCGGGTTGACACAGAGGGAAGCTCTTTATACCTTCAGCTTCAATGGGGATNTGGATTTCAGGGTTCACTTGGAAAACAATCCTTGTGCCAAGTTTGAAGTCATTTTTGTGTAGTATGTCATGTGCTAATGGCCTCCTTGCTTTTACATGATTATGTAGCACTAGTACTCTCGCTGTGACTGTCACTTAACTGAGGGCTCAAGTTTTAGGAATGAATGAAAATATGGCAATGGAATTGGCATGGCTTTATAATGCCTACTCACTTGGCCAGCTCGTTGGGGATTTACATTCGGAAAATATATGAACACGTTTTTGTACGATAATTTATTAAGTCAGGATCCATATTTCATGTTTAGTTACGGTGCTTTTATTTTGATTATCTAGATACAGCCATAAGATGGACTGCAGGACACTGCTTGTATATTGTATTTGTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	96658	102446	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT10

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00753	E2.4.1.214	EC:2.4.1.214	Various types of N-glycan biosynthesis	map00513

Gene Ontology

biological_process
GO:0006486 protein glycosylation

cellular_component
GO:0016020 membrane

molecular_function
GO:0008417 fucosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001622.1	PF00852.14	Glyco_transf_10	164	387	2.00E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.938
SRR1783600	control	23.131
SRR1783602	moderate drought stress	23.306
SRR1811619	moderate drought stress	23.417

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.172
DRR006520	Root Summer glycyrrhizin high producing strain	24.146
DRR006521	Root Winter glycyrrhizin high producing strain	30.696
DRR006522	Root Winter glycyrrhizin high producing strain	30.004
DRR006523	Root Summer glycyrrhizin low producing strain	21.295
DRR006524	Root Summer glycyrrhizin low producing strain	20.921
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.736
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.800

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.755
SRR2868004	Drought Stress (root)	47.547
SRR2967015	Control (root)	45.563

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.152
SRR9715740	Leaf	23.908
SRR9715741	Leaf	28.955
SRR9715739	Root	11.438
SRR9715742	Root	23.025
SRR9715743	Root	19.567

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.074
SRR8749028	MeJA induced 9h	48.381
SRR8749029	MeJA induced 9h	36.468
SRR8749030	Uninduced	47.125
SRR8749031	Uninduced	70.970
SRR8749032	Uninduced	36.333

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.778
SRR8400027	Control - Root	55.863