Gene detail information of Glyur000006s00001616 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G58490.1 | 3.00E-132 | Phosphatidic acid phosphatase (PAP2) family protein |
| NR | XP_003638097.1 | 0 | Sphingosine-1-phosphate phosphatase [Medicago truncatula] |
| COG | YP_001414047.1 | 5.00E-06 | PA-phosphatase-like phosphoesterase [Parvibaculum lavamentivorans DS-1] |
| Swissprot | tr|Q9M2G7|LPPD_ARATH | 0 | Lipid phosphate phosphatase delta |
| trEMBL | tr|G8A197|G8A197_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK42029.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00006 | 60254 | 65471 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000006s00001616.1 | PF01569.16 | PAP2 | 110 | 203 | 7.70E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.813 |
| SRR1783600 | control | 17.456 |
| SRR1783602 | moderate drought stress | 18.124 |
| SRR1811619 | moderate drought stress | 18.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.652 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.306 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.606 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.583 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 52.536 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 52.441 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.548 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 40.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.573 |
| SRR2868004 | Drought Stress (root) | 61.209 |
| SRR2967015 | Control (root) | 52.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 168.583 |
| SRR9715740 | Leaf | 113.455 |
| SRR9715741 | Leaf | 204.616 |
| SRR9715739 | Root | 25.777 |
| SRR9715742 | Root | 60.313 |
| SRR9715743 | Root | 52.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.840 |
| SRR8749028 | MeJA induced 9h | 48.101 |
| SRR8749029 | MeJA induced 9h | 52.953 |
| SRR8749030 | Uninduced | 69.676 |
| SRR8749031 | Uninduced | 76.765 |
| SRR8749032 | Uninduced | 60.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.214 |
| SRR8400027 | Control - Root | 35.194 |