Gene detail information of Glyur000006s00001614 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G24420.1 | 2.00E-66 | alpha/beta-Hydrolases superfamily protein |
| NR | XP_003520729.1 | 1.51E-142 | PREDICTED: probable strigolactone esterase D14 homolog [Glycine max] |
| COG | YP_007119598.1 | 1.00E-55 | alpha/beta hydrolase [Microcoleus sp. PCC 7113] |
| Swissprot | tr|J9U5U9|DAD2_PETHY | 4.00E-76 | Probable strigolactone esterase DAD2 |
| trEMBL | tr|I1JQE4|I1JQE4_SOYBN | 6.00E-143 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G36500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00006 | 50482 | 52084 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000006s00001614.1 | PF12697.2 | Abhydrolase_6 | 28 | 258 | 2.50E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.124 |
| SRR1783600 | control | 0.134 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.028 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.129 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.115 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.131 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.259 |
| SRR2868004 | Drought Stress (root) | 9.956 |
| SRR2967015 | Control (root) | 4.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.282 |
| SRR9715741 | Leaf | 0.948 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.163 |
| SRR8749029 | MeJA induced 9h | 0.148 |
| SRR8749030 | Uninduced | 0.504 |
| SRR8749031 | Uninduced | 0.260 |
| SRR8749032 | Uninduced | 2.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.793 |
| SRR8400027 | Control - Root | 1.919 |