Gene detail information of Glyur000006s00001610 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37270.2 | 7.00E-104 | ribosomal protein 5B |
| NR | AFK39266.1 | 1.04E-141 | unknown [Lotus japonicus] |
| COG | YP_001013746.1 | 3.00E-62 | 30S ribosomal protein S7P [Hyperthermus butylicus DSM 5456] |
| Swissprot | tr|O65731|RS5_CICAR | 4.00E-136 | 40S ribosomal protein S5 (Fragment) |
| trEMBL | tr|I3SG74|I3SG74_LOTJA | 4.00E-142 | Uncharacterized protein {ECO:0000313|EMBL:AFK39266.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00006 | 21530 | 24215 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000006s00001610.1 | PF00177.16 | Ribosomal_S7 | 50 | 204 | 5.40E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 92.920 |
| SRR1783600 | control | 92.630 |
| SRR1783602 | moderate drought stress | 83.798 |
| SRR1811619 | moderate drought stress | 83.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 123.459 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 122.899 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 95.081 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 92.323 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 96.925 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 97.758 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 44.450 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 44.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 267.291 |
| SRR2868004 | Drought Stress (root) | 159.340 |
| SRR2967015 | Control (root) | 156.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 68.386 |
| SRR9715740 | Leaf | 50.687 |
| SRR9715741 | Leaf | 50.394 |
| SRR9715739 | Root | 123.193 |
| SRR9715742 | Root | 86.864 |
| SRR9715743 | Root | 99.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 128.008 |
| SRR8749028 | MeJA induced 9h | 51.498 |
| SRR8749029 | MeJA induced 9h | 87.693 |
| SRR8749030 | Uninduced | 9.737 |
| SRR8749031 | Uninduced | 4.583 |
| SRR8749032 | Uninduced | 11.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 161.311 |
| SRR8400027 | Control - Root | 144.470 |