Gene detail

Gene detail information of Glyur000006s00001609

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G58460.1	2.00E-132	RHOMBOID-like protein 15
NR	XP_004494298.1	0	PREDICTED: uncharacterized protein At3g58460-like [Cicer arietinum]
COG	YP_003160142.1	9.00E-08	rhomboid family protein [Jonesia denitrificans DSM 20603]
Swissprot	tr\|Q8LB17\|Y3846_ARATH	3.00E-177	Uncharacterized protein At3g58460
trEMBL	tr\|I1JQD8\|I1JQD8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G36460.1}

Sequence

Transcript Sequence

>Glyur000006s00001609.1
ATGGCATACTTGACACAGGCAGGGTTGCCTACTAGGTTGAATCAATGGTGGGAAAGCATTCCATTCCTCACTTCTGCAGTGGTGGTTGTCTGTGGAGCAATTTACTTGGTTTGTCTTTTGGTTGGATATGATTCCTTCGCCGAGATATGCTTCTTNCCGTCTTCTGTTGTATCACGGTTTCAAGTTTACAGGATTTATACCTCCATTCTTTTCCATGGTTCAATGCTTCATGTTCTCTTCAACATGATGGCTTTAGTTCCCTTGGGTTCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGCTATATGTCATTATTTTGTTGGCTACAAGCAATGCTATATTTCATGTTCTCATAGCGCTGCTGGTGGCACACAATCCTTTTCTTACAAATGATTACCTCATGAATGAGTGTGCTATCGGCTTCTCAGGAGTTCTATTTTCGATGATTGTTATAGAGACAAGCCTGAGTGGAGTTCAATCCAGGAGGTATGCATTTTTTTTGTTGGTAGTGTTCCAGCTCCTNATGCAAAATGTCTCACTACTTGGACACCTTTGTGGCATTTTATCTGGGTTTGCATATATATATGGCTTGTTTAATTTCCTCATACCTGGGACATCCTTTTATTCTTCAATTGAAGGCTCGTCCTGGCTTTCATCATGNGTGAGACGTCCTAAATTTATTGTTTGCACTGGCGGAAATCCTTCGGGNTATATCCCAACACATACAAGCCAAAATTCAACAACCGGTGGAATACTTTCTGGAAATATTTGGAGGAACCTGTCATCATTGATGCCTCAAAGGGAAGNGTCTGCTCAGTCTGTTGAGGACAGTAGGTTCCCTGGGAGGGGAAGGACCCTTGCTTCTGATCAAGCTCAANTGGCTTCTGGTCTTCATTCAGATTCAAATCTTCAAGCTAGACTCTTGGAGGATAGTAGTCCCAATCATCCTTTAGAATCAGCCATTCTAAGTACTACTCAACGGTCATCTGAAGGAAGGCATTCAGTTGATAATTTAGCTACAGCAGCTGCGGGTGTTCCACAATATCAGGGTGCAGCTGCTTCAGAAGAAGAGATTAAAAAACTTGTATCAATGGGCTTTGATAGGGTAAAAATCAATTTGCATATCTTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00006	15571	20135	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000006s00001609.1	PF01694.17	Rhomboid	57	200	1.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.855
SRR1783600	control	7.751
SRR1783602	moderate drought stress	8.657
SRR1811619	moderate drought stress	8.135

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.110
DRR006520	Root Summer glycyrrhizin high producing strain	12.169
DRR006521	Root Winter glycyrrhizin high producing strain	20.221
DRR006522	Root Winter glycyrrhizin high producing strain	19.418
DRR006523	Root Summer glycyrrhizin low producing strain	9.562
DRR006524	Root Summer glycyrrhizin low producing strain	9.775
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.871
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.911

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.946
SRR2868004	Drought Stress (root)	38.200
SRR2967015	Control (root)	43.202

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.081
SRR9715740	Leaf	19.586
SRR9715741	Leaf	23.979
SRR9715739	Root	11.209
SRR9715742	Root	17.454
SRR9715743	Root	16.585

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.313
SRR8749028	MeJA induced 9h	15.752
SRR8749029	MeJA induced 9h	11.850
SRR8749030	Uninduced	12.038
SRR8749031	Uninduced	6.437
SRR8749032	Uninduced	7.806

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.100
SRR8400027	Control - Root	34.968