Gene detail

Gene detail information of Glyur000005s00001129

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20900.1	4.00E-74	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004486472.1	0	PREDICTED: uncharacterized protein LOC101501939 [Cicer arietinum]
COG	YP_001277975.1	4.00E-20	cold-shock protein, DNA-binding [Roseiflexus sp. RS-1]
Swissprot	tr\|Q9SUC3\|MS5_ARATH	3.00E-92	Protein POLLENLESS 3 {ECO:0000303\|Ref.2}
trEMBL	tr\|V7BN87\|V7BN87_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW19459.1}

Sequence

Transcript Sequence

>Glyur000005s00001129.1
ATGCTCTTTGAAAGAAACTCTCCGGCGAGGTGCTTTGTGACGCCTCCGCCACAATCGCCATGGAAGTCGTCGAGACCTTCACGTTCTCCCACCAATAGTACCATGCTGCCACTTTCAGAGAGAAAGAAATCACCATCACCAGCCTCTGCGAATAAAGGTGATCTTTTTCATATCATTCACAAGGTTCCTGCTGGGGACTCCCCCTATGTCAAGGCCAAGCAGGTTCAGTTGGTGGATAAGGATCCGGGTAGAGCAATTTCCCTGTTCTGGGCTGCCATCAATGCTGGGGATCGTGTTGAGAGTGCATTGAAGGACATGGCCTTAGTTATGAAGCAACTGAACCGCTCCGATGAGGCGATTGAAGCTATCAAATCTTTCCGTCATCTATGCCCTTCTGATTCTCAGGAATCTCTTGACAACATCTTGAGGTCAGGAAGGGTTGATGAAGAGATTGCCATGCTTCATCACAAGTTGAAGCAAATTGAAGAAGGTGTGACATTTGTGGGAAGGACGACGAAACAAGCAAGATCTCAAGGGAAGAAAATTCAAATAACAGCTGAACAAGAGATATCAAGGATACTTGGGAACTTGGCCTGGGCTTACTTGCAAAAAGGCGACTACAAAACTTCTGAGGAACATTATAGGAACAAGCAGTGCAATTTGGCAATATGTTTGATGCAAATGAACAAGATCTCAGAAGCAAAGTTTCTACTTCAGGCAGTAAGCACCGCAACAAAAAATAGAAAGATGGACGATTCCTTTGTCAAGTCTTTCGAACGCGCTTCACAAATGCTGCAAGAGATAGAGTCATCATCATCACTAGTAGATCCAGTTAAAGTGAAGGATGACAAATCTAAGCAAACTCAAGGATCTTCAGTGAGGAGTACTATGTCACAGTGTTCCACACAAAATTCAGAGAACTTAAGTGGAAAGAACTCTGATATTGTTGTTAAAAGTAGGACAGAAAGTTGGTCTTCGACATCTGAGGTGGAAGCACCTCATGCCAGGAGGAGATTGTATGACTCCCCGGATCATCCTGCAAGAAGAGATCATCAGAAGGAGGTTCCTTACACAAAACCAAAAAGATGTTCATGGGATGTCCATTCACATTCAGATCCTAAACCTTCATTTGGAAGTCCTCATAATGAGAAGAAGTATGGCATAATGCATCCAAACTCAACACAAAACCATTTGTCTTCACCTACCAATGCAATGTGGAGGTCAAGGAGTACATTGGAAGATCCTGCAATAATAGCAAAGCATGAAAATGCAACAGTAATTGGTTCTGGTTCATTACACACTTTGAACACAGAAGCAACTATGAAGTTCACAGAGAAGGACAAATCTGCTGAAGAATCGTATGACATGGCTTTGATTAATCTTGATGAATTTGCCTCAGGAAACAGAGAACTACTCCATAAGAAGAGTTGGGCAGACATTGTAGAAGAAGAACAAGATGAAGAACAGCAATTCTTTAGTAGTGGATATACAAATCTTGATGGTTTGAATGGTGGTGCTCAAGTGTTTAATGATGAAAATGAAAACTCAAACATAACCGAATGTCTAAACCAAAAGCTTGAATCATCATTGAACCTGAAAGATGGATATAATCATATTCATAACACACAACCTGGGAATGCCATTCTGTTAAGGAATCCAACAGCAAGGCGATCTTTGTGTTTCAATCCAGAATTGACAAAGGAAAGAGGTTCATTGTCTGGAGAGAAGAAACCAACAAGGAGAAACAGGTTGCAAGTTTTTCAGGATATTACTCCTCAACCTGAAACCCCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	767350	770303	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001129.1	PF00515.23	TPR_1	192	215	0.0077

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.942
SRR1783600	control	0.964
SRR1783602	moderate drought stress	0.743
SRR1811619	moderate drought stress	0.775

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.589
DRR006520	Root Summer glycyrrhizin high producing strain	1.617
DRR006521	Root Winter glycyrrhizin high producing strain	0.059
DRR006522	Root Winter glycyrrhizin high producing strain	0.039
DRR006523	Root Summer glycyrrhizin low producing strain	1.158
DRR006524	Root Summer glycyrrhizin low producing strain	0.969
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.371
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.367

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.863
SRR2868004	Drought Stress (root)	1.431
SRR2967015	Control (root)	1.680

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.468
SRR9715740	Leaf	0.220
SRR9715741	Leaf	0.000
SRR9715739	Root	0.081
SRR9715742	Root	0.183
SRR9715743	Root	0.488

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.559
SRR8749028	MeJA induced 9h	2.604
SRR8749029	MeJA induced 9h	0.879
SRR8749030	Uninduced	0.035
SRR8749031	Uninduced	0.040
SRR8749032	Uninduced	0.085

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.945
SRR8400027	Control - Root	2.656