Gene detail

Gene detail information of Glyur000005s00001126

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34690.1	1.00E-54	Glycolipid transfer protein (GLTP) family protein
NR	AFK48156.1	1.34E-117	unknown [Lotus japonicus]
trEMBL	tr\|I3T6L4\|I3T6L4_LOTJA	5.00E-118	Uncharacterized protein {ECO:0000313\|EMBL:AFK48156.1}

Sequence

Transcript Sequence

>Glyur000005s00001126.1
ATGGCAGAGGCTGCTGCAGGTAATGAACTACAACAGCATCGACGCCGCCAGAGAAAAGGGCTTGCAGGTGTTATTCTGGCGTGCTTCTCTGCATCTGCATCATGCTGCAGAAAGGAACAACAACTGCAATTGCAACCTGATGATCACGAGGATGACGACAATGACACAGAGATGAGAAGAAGAAGCAGAAGCAGAAGCAGGCCTAATTCCAGTACTGCCGTTGATGAAAAGCCTCTTCGCAAAATCGCAGACGCATTCAAAGAGCTTGCAAACGTTGTTGTCTCATCATCAGATGTCGANGTTGCTGCCTTTTCCCGCGCCTGTTCTTCTGTGGCTCCTCTTTTTCGTTGCATTGATGGCTTCCACTTCAACTTCATAGAGACGGATTACGTTACCAAGGTTAATGATATAGCAGAGGCATCAAAGTCCTTTAGGACATTGCAATCTATGGTTGATGGGGATGTGAAGGCTAATTGTGTGAGAAATCAAGGGAGCCATTCGAGAAATCTTTTGGCAATAAAACGTGGACTTGATTTTCTCAGCGTGCTATGTGAACAAATTATGCTCACAGAGTATAACGACGTCGTAGCAGCAGGTACTACTGTACTGAGGATCTTCTTCCATATGGCAGAGCAGGCTGCAGCTGGTAATGAACGACGTCGTAGCCGACGCCAGAGAAGTGTTCTTCTCGCGTGCTTCTCTGCAGCACCTGCTTCATGCAGAAAGGAACAGCTGCAATTGCAACCTCATCAAGAGAATGACAATATTGACACTGACACGGAGGAGATGAGAAGAAGAAGAAGAAGAAGAATTAGTAGCAGGTCTTCCACTGCCGTCGATGAAAAGCCCCTCCGCAAAATCGCTGACGCATTCAAAGACCTTGCAAACATTGTTGTCAACTCCGACCAGAGTTCTTCTTCACCAGATCATGTCATTGAGGTTGCTGCCTTTTCCCGCGCCTGTTCTTTTGTCGCTCCCCTTTTTGGCTCTGTTAACGATATAGCAGAGGCATCAAAGTCCTTTAGGACATTGCAATCTATGGTTGATCAGGATGTGCAGGCAAATTGTGTGAGAAAACAAGGCAGCCATTCGAGAAATCTTTTGAAAATAAAACGTGGGCTTGACTTTCTCAGAGTGCTTTTTGAACAAATTATGCTTACAGAGGGAAATTCCATTCGGGATGCAGTTTCCAAGGCTTACACACAAATATTCAATTTACATCATGGTTGGGCTCTCAGAAAGGCCGTTTCTGTAAGGTTGCATTACATCCCTTCAAAGCAGCAACTATATAGGAAACTCAATGAAGATGAGTCTGCAGCAAGGGTCCTAATGCAAACCTATGTAATGGCATCCCCNCCTCTACTGCGATACATCGAGAAGATCTTTCTTGACAGAGAATTGGGTATAGATTGGTGAACCTTCTCTTGTACTCTGTTTAAACAAATTGTACAANTGAATATAATAATCCTGTATCGATGGGTTATGAGATGCCCCTTGCTGCTACAGGTGGTGTACTTCCGAATGGAGGTGTTTTGATTGATTTGAATAAGTATTATGGACTTTTATTNTTTGGAATGTTTTCGATGGAAAATAATTTCTTTGGCTTATGATCAGAAAACCATTCTTGCAGTATTTGAAAGAACATCGTTTTTGTGCACAGGGTTAATCTCCTAAATACAATGAGAGAGAGAGAGAGAGAGAGAGAGGAAATTGCAAAGGAAATGTGAATTTTAAGTTTGGACCAAATAAGCACCTAGTATGCATACAAAATTAGAAAATTAATAAAAAAAAGTCTCACAGCATCAATTCTTCCAAGTGCCACTGAACAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	745965	755422	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0046836 glycolipid transport

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0017089 glycolipid transporter activity

GO:0051861 glycolipid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001126.1	PF08718.6	GLTP	98	190	1.20E-15
Glyur000005s00001126.1	PF08718.6	GLTP	336	436	7.90E-25
Glyur000005s00001126.2	PF08718.6	GLTP	98	236	7.30E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.497
SRR1783600	control	11.110
SRR1783602	moderate drought stress	14.258
SRR1811619	moderate drought stress	14.474

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.647
DRR006520	Root Summer glycyrrhizin high producing strain	5.285
DRR006521	Root Winter glycyrrhizin high producing strain	0.757
DRR006522	Root Winter glycyrrhizin high producing strain	0.879
DRR006523	Root Summer glycyrrhizin low producing strain	11.192
DRR006524	Root Summer glycyrrhizin low producing strain	10.763
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.135
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.055

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.813
SRR2868004	Drought Stress (root)	22.259
SRR2967015	Control (root)	25.407

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.075
SRR9715740	Leaf	10.858
SRR9715741	Leaf	22.218
SRR9715739	Root	22.921
SRR9715742	Root	16.337
SRR9715743	Root	17.859

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	117.245
SRR8749028	MeJA induced 9h	97.837
SRR8749029	MeJA induced 9h	121.592
SRR8749030	Uninduced	135.928
SRR8749031	Uninduced	33.580
SRR8749032	Uninduced	59.249

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.648
SRR8400027	Control - Root	28.468