Gene detail information of Glyur000005s00001120 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G19430.1 | 3.00E-105 | late embryogenesis abundant protein-related / LEA protein-related |
| NR | KEH37068.1 | 1.90E-178 | root cap/late embryogenesis-like protein [Medicago truncatula] |
| trEMBL | tr|A0A072V6T2|A0A072V6T2_MEDTR | 7.00E-179 | Root cap/late embryogenesis-like protein {ECO:0000313|EMBL:KEH37068.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00005 | 714814 | 716538 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000005s00001120.1 | PF06830.6 | Root_cap | 244 | 300 | 2.20E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.107 |
| SRR1783600 | control | 0.146 |
| SRR1783602 | moderate drought stress | 0.944 |
| SRR1811619 | moderate drought stress | 0.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.437 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.455 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.775 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.761 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.214 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.528 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.277 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 46.047 |
| SRR2868004 | Drought Stress (root) | 5.707 |
| SRR2967015 | Control (root) | 1.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.199 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.322 |
| SRR9715739 | Root | 0.696 |
| SRR9715742 | Root | 0.760 |
| SRR9715743 | Root | 0.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.035 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.056 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.364 |
| SRR8400027 | Control - Root | 0.477 |