Gene detail

Gene detail information of Glyur000005s00001117

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G44340.1	tubulin beta chain 4
NR	XP_004486478.1	PREDICTED: tubulin beta-3 chain-like [Cicer arietinum]
Swissprot	tr\|Q40665\|TBB3_ORYSJ	Tubulin beta-3 chain
trEMBL	tr\|W9R7I4\|W9R7I4_9ROSA	Tubulin beta-1 chain {ECO:0000313\|EMBL:EXB75201.1}

Sequence

Transcript Sequence

>Glyur000005s00001117.1
ATGAGAGAAATCTTGCACATCCAGGGCGGGCAGTGTGGAAACCAGATCGGTGCCAAGTTCTGGGAGGTGATATGCGACGAGCACGGAATCGACCACACCGGGCAGTACAGCGGCGATTCCGAGCTCCAGCTTGAACGCATCAATGTCTACTACAACGAAGCCAGCGGCGGAAGGTATGTCCCACGCGCCGTCCTCATGGATCTAGAGCCCGGTACCATGGACTCCGTCAGATCCGGCCCATTCGGCCAGATCTTCCGCCCCGACAACTTCGTATTCGGATTTCAAGTGTGTCATTCGTTGGGGGGTGGTACGGGTTCTGGAATGGGGACGCTTNTGATCTCGAAGATTAGGGAAGAGTATCCGGATCGTATGATGCTGACGTTCTCCGTGTTTCCTTCCCCTAAGGTGTCTGACACTGTCGTGGAGCCTTACAACGCCACGCTCTCTGTGCATCAGCTTGTTGAGAATGCGGACGAGTGCATGGTCTTGGACAATGAGGCTCTCTACGACATCTGCTTCCGGACTTTGAAGCTTGCCACCCCCACATTTGGTGACCTTAACCACCTCATTTCCGCCACCATGAGTGGAGTAACTTGTTGTCTACGTTTCCCTGGACAACTGAACTCTGATCTTCGTAAGCTTGCTGTCAATCTTATCCCATTCCCACGTCTCCATTTCTTCATGGTTGGGTTTGCACCTTTGACATCAAGAGGATCGCAGCAGTACCGCGCTTTGACTGTACCCGAATTGACTCAGCAGATGTGGGATGCTAAGAACATGATGTGTGCTGCTGATCCACGCCATGGCCGTTATTTGACTGCTTCAGCAATGTTCCGTGGTAAGATGAGCACAAAGGAGGTAGATGAGCAGATGATCAATGTACAAAACAAGAACTCTTCATACTTTGTTGAGTGGATTCCTAATAATGTCAAGTCCAGCGTGTGTGATATTCCACCCAAGGGTCTTAAGATGGCATCCACTTTCATTGGTAATTCAACTTCAATTCAGGAGATGTTCAGGAGAGTTAGNGAGCAGTTCACAGCTATGTTCAGGCGCAAGGCTTTCTTGCACTGGTACACTGGGGAGGGAATGGATGAAATGGAATTCACCGAGGCCGAGAGTAACATGAATGATCTTGTTGCCGAGTACCAGCAATACCAGGATGCCACTGCTGATGAGGAAGAGTATGACGAGGAGGAAGAAGAGGATGTTGCTGCTTAAGGCATCTCTATGATTTGTCAAAATTGTTTCAGATATCGGTATGGTTGGCTTTGAGCGAGTGGTATAAGTTTAAATTGTGGAGCAGTCAAGTTAGATTGACTCGTTAATGTGTATGCATATGTATTGATTGTCATTGTTCAAACTGGGCTTTGTTGACAATGCTTCTGTTCTTGAGATTAAGTCTTGGATGTTTGTAATGGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	706441	709146	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007017 microtubule-based process

GO:0051258 protein polymerization

cellular_component

GO:0005874 microtubule

GO:0043234 protein complex

molecular_function

GO:0003924 GTPase activity

GO:0005200 structural constituent of cytoskeleton

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001117.1	PF00091.20	Tubulin	3	92	1.70E-18
Glyur000005s00001117.1	PF00091.20	Tubulin	93	183	2.10E-27
Glyur000005s00001117.1	PF03953.12	Tubulin_C	222	343	7.30E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	116.781
SRR1783600	control	120.185
SRR1783602	moderate drought stress	67.765
SRR1811619	moderate drought stress	70.563

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	138.465
DRR006520	Root Summer glycyrrhizin high producing strain	139.530
DRR006521	Root Winter glycyrrhizin high producing strain	57.262
DRR006522	Root Winter glycyrrhizin high producing strain	60.387
DRR006523	Root Summer glycyrrhizin low producing strain	127.292
DRR006524	Root Summer glycyrrhizin low producing strain	127.053
DRR006525	Leaf Summer glycyrrhizin high producing strain	57.242
DRR006526	Leaf Summer glycyrrhizin high producing strain	57.196

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	182.357
SRR2868004	Drought Stress (root)	140.767
SRR2967015	Control (root)	145.871

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.296
SRR9715740	Leaf	43.587
SRR9715741	Leaf	60.615
SRR9715739	Root	47.629
SRR9715742	Root	82.084
SRR9715743	Root	75.259

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	78.427
SRR8749028	MeJA induced 9h	81.652
SRR8749029	MeJA induced 9h	65.281
SRR8749030	Uninduced	36.545
SRR8749031	Uninduced	30.651
SRR8749032	Uninduced	23.899

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	119.195
SRR8400027	Control - Root	130.253