Gene detail

Gene detail information of Glyur000005s00001114

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34770.1	1.00E-90	fatty acid hydroxylase 1
NR	KEH37077.1	5.80E-149	fatty acid 2-hydroxylase-like protein [Medicago truncatula]
COG	YP_003091961.1	4.00E-40	fatty acid hydroxylase [Pedobacter heparinus DSM 2366]
Swissprot	tr\|O48916\|FAH1_ARATH	1.00E-121	Fatty acid 2-hydroxylase 1
trEMBL	tr\|A0A072V5H1\|A0A072V5H1_MEDTR	2.00E-149	Fatty acid 2-hydroxylase-like protein {ECO:0000313\|EMBL:KEH37077.1}

Sequence

Transcript Sequence

>Glyur000005s00001114.1
ATGGACGGTCGAGATCGTTTGGCGCACACCCCCAAAAACACTCCTCACTATCCCTTCCCCATAGCTCAGCGTCGAGAAGGGAACGGTGCGGGTGGTGCGCCGCGCGGTGCCGCTGCTGCTGGTGTTGCCTCTCCGTTCCGACAAAACGCACGCGTTTTCATTTCGGATTCGAATCTTAGTTGCATTGTTCCATCTGCCACTGTTTGTTCGATGGTTGCGCAGAACTTTGTAGTTGATTTGAATAAGCCCCTTGTTTTCCAGGTCGGACATCTCGAAGAAGCTTATGAAGAGTGGGTTCACCAGCCCATTTTCTTGACGCGCACAGTCTGGTGGGCAATACCAGTCATTTGGCTGCCAGTTGTATGTTGGTTTATATATAACTCTATACGAATGGGACTCAGTTGTCCTCATATAGTTCTATTGGTGGTTCTTGGCATTTTTGTGTGGACATTGATTGAATACACATTGCACCGATTTCTTTTCCACATTAAAACAAAGACCTACTGGGGAAATACCATGCATTATCTTCTCCATGGCTGCCACCACAAACATCCCATGGATGGCTTGAGACTTGTTTTCCCCCCTGCTGCAACAGCTATATTATTGTTCCCGTTCTGGAACTTGGTGAAGCTCATGTCCACCCCTTCAACTACTCCTGCTTTATTTGGAGGCGGCTTATTGGGTTATGTAGTGTATGATTGCACACATTATTACTTGCACCATGGTCAGCCAAAGACTGAAGTTCCCCGAAATCTCAAGAAGTACCACTTGAACCATCACTTTCGGATCCAGGATAAAGGCTTTGGGATCACTTCATCACTATGGGATAAAGTTTTTGGAACACTTCCTTCATCAAAAGCGGACGCGAAAAATATGTAAATTACTGTCAGGGGTAGCATATGTTGGTTGATTAAAATAATAGCAAATTCAGGAATTCCTGTTTTGTTTGTCTAATTTATTTTGCTTCCCAATTAATGTTTATGGGGGTTAGCGTGCCATCTTTCGTCAATTTTATGGTGCCNAAGTTCTACAATTGAACTTTCTGTAAAAATTGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	667118	671820	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001114.1	PF04116.8	FA_hydroxylase	142	261	1.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.299
SRR1783600	control	34.188
SRR1783602	moderate drought stress	17.716
SRR1811619	moderate drought stress	17.521

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.538
DRR006520	Root Summer glycyrrhizin high producing strain	16.101
DRR006521	Root Winter glycyrrhizin high producing strain	3.968
DRR006522	Root Winter glycyrrhizin high producing strain	3.727
DRR006523	Root Summer glycyrrhizin low producing strain	10.507
DRR006524	Root Summer glycyrrhizin low producing strain	10.828
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.208
DRR006526	Leaf Summer glycyrrhizin high producing strain	43.352

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	62.231
SRR2868004	Drought Stress (root)	30.102
SRR2967015	Control (root)	45.677

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.461
SRR9715740	Leaf	10.273
SRR9715741	Leaf	8.711
SRR9715739	Root	14.558
SRR9715742	Root	6.544
SRR9715743	Root	9.969

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.625
SRR8749028	MeJA induced 9h	84.616
SRR8749029	MeJA induced 9h	78.357
SRR8749030	Uninduced	20.671
SRR8749031	Uninduced	7.828
SRR8749032	Uninduced	8.987

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.353
SRR8400027	Control - Root	49.323