Gene detail

Gene detail information of Glyur000005s00001110

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20840.1	0	FAD-binding Berberine family protein
NR	KEH31331.1	0	FAD-binding berberine family protein [Medicago truncatula]
COG	YP_008155704.1	4.00E-34	hypothetical protein SCE1572_46785 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q9SVG4\|RETOL_ARATH	0	Reticuline oxidase-like protein (Precursor)
trEMBL	tr\|A0A072UPP4\|A0A072UPP4_MEDTR	0	FAD-binding berberine family protein {ECO:0000313\|EMBL:KEH31331.1}

Sequence

Transcript Sequence

>Glyur000005s00001110.1
ATGGCCTTTACATATAGCACTAAAAAATTAGCACTCCTATCAATAATCACCATTTTCATCTCAATTTTCCCTGAACCTTCTACCTCTGTTGACCTTGAAAGTGGTTTCCTTCAATGTTTCTCATCAGGTTTAGGAAACTCAAACTCAACTGCAGAACTAGTACTCACCAAGAACAGTTCCTCCTATGCATCCCTTCTTCAATCTTCCATAAGGAACCTAAGGTTCATGGGAACTTCAGTCCCAAAACCAAACCTTATTGTTACCCCAAGAGACCTATCCCACATCCAAACATCAATCAAATGTTCAGTGAAACAAGGCCTTCAAATAAGAGTTAGAAGTGGTGGACATGACTANGAGGGCCTTTCCTATGTCTCTAATGATGATGTCCCATTCCTAATCATTGATCTCACAAACCTTAGGTCCATAACCATTGACATCAAAGATGAAAGTGCATGGGCAGGTGCTACCCTTGGAGAACTCTACTATGCAATTGCTAAAAAAAGTAATGTTCATGNTTTCCCAGCTGGNAGTTGTCCAACTGTTGGTGTAGGAGGACACTTTAGTGGAGGTGGGTTTGGTACTATATTCAGAAAATATGNTCTTGCAGCTGATAATGTAATTGATGCCCAGATGGTAGATGTTAATGGGAAGATACTNAAGAATAGAACTTTGATGGGTGAGGATCTATTTTGGGCCATAAGGGGTGGGGGAGGNTCAAGCTTTGGAGTGGTAACTGCATGGAAAGTTAAGCTTGTACATGTTCCCCCAAAAGTGACAGTTTTCAATATTCCAAAGACATTGGATCAAAATGCAAGTACCCTTTTCCACAAGTGGCAAATTGTTGCTGACAAACTCCCTGGTGAACTCTTTCTTCACTCAGTTATGGGAGTTACCAATTCCAATTCAATGTCTTCTAGTAATGGTGGAAGAACTGTTCTTGTTTCTTTCACAGGACTATATCTTGGGACAGTTGAAAATCTGCTTCCTTTGATGCAGAACAATTTTGCAGAATTGGGTTTGCAGCACAACAACTGCACTGAGATGAGTTGGATTCAATCTGTTCTCTTTTTTGCAGGCTATGATCCAATCAATGATTCCTTGGAGGTGTTACTTCAAAGAAACCAAACATTTGGAAGTTTCAAGGCAAAATCAGACTATGTAATGGAACCTATTCCAACATCAGGTTTAGAAGGGTTGTGGAACATAAACACCAAAACATATAGACTGGATGAGAAGGGTATATTCATACATGGTACCTTACGTTTCAAAGTTCCCAAGACTAGAGCTGCATATTTGAATTATAGGGACCTTGATATAGGAGTGAACCGTGGCAACACAAGCTATGATTATGAAGAAGCAANATCTTGGGGCTTGAAATATTTCAAGTGTAATTTTGAAAGACTGGCAAAAGTAAAGGCTGAGCATGGGGAGTGGGTGTGTTATGGAATTTTGGCAGCTGGGACACTGAACTCGGATGAAGCAAGAGATCTCAACCTGCCATTGAAGGAAAGGTTCTTCCTTCAACCATTGACACCAAGTGAAGCAGCACAAAGGGCAAAGGAATCAGCCAAGGAAATTGTTGCCGTCAAGAAGTTGATAGACAAGAAGGCTTGGCCATATGTTCAGAATGATCTGCGTCTGAGGGCTGAGTATCTTCGCTATGACCTTAACACTCTGGATTATGCAGCAAAAGTTAAGAGCACCCCACAAGCAGAGAAGTACTATGCTGAGGCTGTATCTACCCTGAATGATGTCCTTAGCAAAATTGATTACACAATACACATTACAATGGCCGCAAAACCTTTTCTTCCGCTTCTTTTTCTTCTTTTAAGTATTGTCTCTGCTTCATTGGCAGCACCAAACACAACAGAATCGTTATATACAACTTTCCTTCAATGCCTCACACAACACACAGACCCATCAATCTCCAACCTTGTATTCGCCCAAACAAACTCCTCTTTCTCCACCGTCCTCCAAAACTACGTCCGAAACGCGCGTTTCAACACAAGCTCAACCCCGAAACCTTTAATCATCGTCACCCCAGAGCAAGAACCCCACGTGCAGGGCACTGTTCTCTGCGCCAAGAGCATCAATGTTCAACTCAAGATCAGAAGCGGTGGCCACGATTACGAGGGAATCTCCTATATCTCAAACGAACCCTTCATCATCCTTGACTTGTTCAACTTCAGAAACATCACCGTAGACATAAAAAACGAGGTTGCTATGGTTCAATCCGGTGCCACACTTGGTGAGGTTTATTATAGGATCTGGGAAAAGAGTAAAGTTCATGGCTTTCCTGCTGGGGTGTGTCCAACTGTTGGTGTTGGTGGACATTTCAGTGGTGGAGGCTATGGTAACATGTTGAGGAAATTTGGGTTANCTGTTGATAATGTTATTGATGCACAAATTGTTGATGTTAAAGGTAGGATTTTGAATAGGGAATCAATGGGGGAAGATCTTTTTTGGGCTATTAGAGGTGGTGGGGGAGCAAGTTTTGGNGTGATTTTGTCTTACACTGTGAAACTTGTTCGTGTTCCTGAGANTGTTACTGTTTTTCGTGTTGAGAAGACTTTGGAACAGAATGCCACTGACCTTGTTGTTCAGTGGCAGCAAGTTGCTCCAACAACTGATGACAGGCTCTTCATGAGGCTTCTCTTGCAACCAGTTAGTTCAAAGGTTGTGAAGGGGACAAAAACTGTGAGAGCTTCTGTTGTGGCTTTGTTTCTTGGTGTTGCTGATGAGGTTGTGTCTCTTTTGGGGAAGGAGTTTCCACTTTTGGGGCTAAAGAAGGAGAATTGTACTGAGGTGAGTTGGATTGATTCTGTTCTGTGGTGGGATGATGATGAGAGTCTTAAGAATGGTGCAAAACCTGAGACCCTTTTGAANAGGAATCTTAACTCTGCCAGTTTTCTTAAGAGGAAATCTGATTATGTTCAGAATGCTATTTCAAGAGATGGGTTGGAGTGGATTTGGAAGAGGATGATTGAGTTGGGGAAAACTGGGTTTGTTTTCAACCCTTATGGTGGGAAAATGGGTGAGATTGCTTCTGATGCAACACCATTCCCTCACCGTGCTGGGAACTTGTTCAAGATTCAGTATTCTGTGAATTGGGATGATCCATCACAAGCTATGGCACTGAATTTTACAAATCAGGCTAAGAGGTTGTATAGTTACATGACACCTTTTGTGTCTAAGAATCCAAGGAGTGCGTTTTTGAATTATAGGGACCTTGATATTGGGGTCAANAGTTTTGGCAAGGATAGCTATGAGGAAGGGAAGGTTTATGGGTCCAAGTACTTCAATGACAACTTTGAGAGGCTTGGGAAGGTTAAGACTGCGGTTGATCCAGAAAACTTCTTCAGGAATGAACAGAGTATCCCTGTGCTACCTGCAGGGAAGGCATAG

Protein Sequence

>Glyur000005s00001110.1
MAFTYSTKKLALLSIITIFISIFPEPSTSVDLESGFLQCFSSGLGNSNSTAELVLTKNSSSYASLLQSSIRNLRFMGTSVPKPNLIVTPRDLSHIQTSIKCSVKQGLQIRVRSGGHDXEGLSYVSNDDVPFLIIDLTNLRSITIDIKDESAWAGATLGELYYAIAKKSNVHXFPAGSCPTVGVGGHFSGGGFGTIFRKYXLAADNVIDAQMVDVNGKILKNRTLMGEDLFWAIRGGGGSSFGVVTAWKVKLVHVPPKVTVFNIPKTLDQNASTLFHKWQIVADKLPGELFLHSVMGVTNSNSMSSSNGGRTVLVSFTGLYLGTVENLLPLMQNNFAELGLQHNNCTEMSWIQSVLFFAGYDPINDSLEVLLQRNQTFGSFKAKSDYVMEPIPTSGLEGLWNINTKTYRLDEKGIFIHGTLRFKVPKTRAAYLNYRDLDIGVNRGNTSYDYEEAXSWGLKYFKCNFERLAKVKAEHGEWVCYGILAAGTLNSDEARDLNLPLKERFFLQPLTPSEAAQRAKESAKEIVAVKKLIDKKAWPYVQNDLRLRAEYLRYDLNTLDYAAKVKSTPQAEKYYAEAVSTLNDVLSKIDYTIHITMAAKPFLPLLFLLLSIVSASLAAPNTTESLYTTFLQCLTQHTDPSISNLVFAQTNSSFSTVLQNYVRNARFNTSSTPKPLIIVTPEQEPHVQGTVLCAKSINVQLKIRSGGHDYEGISYISNEPFIILDLFNFRNITVDIKNEVAMVQSGATLGEVYYRIWEKSKVHGFPAGVCPTVGVGGHFSGGGYGNMLRKFGLXVDNVIDAQIVDVKGRILNRESMGEDLFWAIRGGGGASFGVILSYTVKLVRVPEXVTVFRVEKTLEQNATDLVVQWQQVAPTTDDRLFMRLLLQPVSSKVVKGTKTVRASVVALFLGVADEVVSLLGKEFPLLGLKKENCTEVSWIDSVLWWDDDESLKNGAKPETLLXRNLNSASFLKRKSDYVQNAISRDGLEWIWKRMIELGKTGFVFNPYGGKMGEIASDATPFPHRAGNLFKIQYSVNWDDPSQAMALNFTNQAKRLYSYMTPFVSKNPRSAFLNYRDLDIGVXSFGKDSYEEGKVYGSKYFNDNFERLGKVKTAVDPENFFRNEQSIPVLPAGKA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	640591	649844	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015979 photosynthesis

GO:0055114 oxidation-reduction process

cellular_component

GO:0009523 photosystem II

GO:0009654 photosystem II oxygen evolving complex

GO:0019898 extrinsic component of membrane

molecular_function

GO:0003824 catalytic activity

GO:0005509 calcium ion binding

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001110.1	PF01565.18	FAD_binding_4	83	220	6.00E-21
Glyur000005s00001110.1	PF08031.7	BBE	430	474	4.30E-10
Glyur000005s00001110.1	PF05757.6	PsbQ	486	559	6.60E-33
Glyur000005s00001110.1	PF05757.6	PsbQ	557	589	5.10E-06
Glyur000005s00001110.1	PF01565.18	FAD_binding_4	675	812	1.30E-23
Glyur000005s00001110.1	PF08031.7	BBE	1070	1127	6.20E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.131
SRR1783600	control	0.149
SRR1783602	moderate drought stress	0.320
SRR1811619	moderate drought stress	0.240

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.658
DRR006520	Root Summer glycyrrhizin high producing strain	0.465
DRR006521	Root Winter glycyrrhizin high producing strain	0.324
DRR006522	Root Winter glycyrrhizin high producing strain	0.306
DRR006523	Root Summer glycyrrhizin low producing strain	0.805
DRR006524	Root Summer glycyrrhizin low producing strain	0.833
DRR006525	Leaf Summer glycyrrhizin high producing strain	169.136
DRR006526	Leaf Summer glycyrrhizin high producing strain	166.935

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.040
SRR2868004	Drought Stress (root)	18.199
SRR2967015	Control (root)	14.675

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	214.907
SRR9715740	Leaf	244.601
SRR9715741	Leaf	260.365
SRR9715739	Root	1.546
SRR9715742	Root	10.174
SRR9715743	Root	8.041

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	90.654
SRR8749028	MeJA induced 9h	268.791
SRR8749029	MeJA induced 9h	137.569
SRR8749030	Uninduced	410.482
SRR8749031	Uninduced	196.165
SRR8749032	Uninduced	154.678

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.696
SRR8400027	Control - Root	3.006