Gene detail

Gene detail information of Glyur000005s00001104

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30700.1	6.00E-180	FAD-binding Berberine family protein
NR	KEH37085.1	0	reticuline oxidase-like protein [Medicago truncatula]
COG	YP_001252809.1	3.00E-34	FAD-dependent oxidoreductase [Clostridium botulinum A str. ATCC 3502]
Swissprot	tr\|Q9SVG4\|RETOL_ARATH	3.00E-177	Reticuline oxidase-like protein (Precursor)
trEMBL	tr\|A0A072VFY3\|A0A072VFY3_MEDTR	0	Reticuline oxidase-like protein {ECO:0000313\|EMBL:KEH37085.1}

Sequence

Transcript Sequence

>Glyur000005s00001104.1
ATGGGAGTTCTTGTTTCTCCTAAAATGCTGCTACCTTTGCTTCCTCCCATTGTTGTGTTGTTGATCTCTCTCTTTTCCTCTGCTACTGCTACAAATTCACCTCACAACACTTTCATTCAATGCCTTGTAAACCATTCAGACCCTTCCTACCCAATAAGTGAGGCAATTTTCACACAAAACAGTTCTTCATTCCCTTCAGTTTTACAAGCCTACATCAGAAACCTTCGTTTCAACACCTCAAAAACACCAAAGCCATTCCTCATAGTCACTCCATTCCATGTCTCCCACATACAAGCAGCCATTATCTGTGGCCAAAAACACAACTTTCAGATGAAAATCAGAAGTGGGGGGCATGACTATGAGGGTGTGTCCTACGTGGCAGAGGTTCCATTCTTCCTCCTAGACATGTTCAACCTTAGATCCATCGAAATTGACATGGACACTGAAACAGCTNGGGTCCAATCCGGTGCAACACTTGGTGAAGTTTACTATAGAATCGCTGAGAAGAGTAAAAATCATGGTTTCCCAGCTGGGGTTTGTCCCACAGTNGGGGTGGGAGGTCATGTTAGTGGTGGTGGCTATGGCAACATGATGAGAAAGTATGGTACTTCAGTTGATAATGTCATTGATGCTCAAATAGTTGATGCTAAAGGTAGATTGCTTGATAGAAAATCAATGGGTGAAGATCTCTTTTGGGCCATAGCAGGTGGTGGTGGAGCTAGCTTTGGTGTTGTTCTTTCCTACAAGATAAAACTAGTTAGAGTTCCTGAAAAAGTCANTGTTTTCCAAGTACAAAGGACTCTGGAGCAAAATGTCACTGACATAGTTTACAATTGGCAGCAGGTGGCACCAACTACTAGCAATGACCTTTTCATTAGGCTCATCCTGGAAGTGGTAGCACAAAATAATGGGGTGAAGACTNTAAGGGCTACATTTATAGCTCTATTCCTTGGTAACTCCAAAAGCCTTGTTTCCCTCTTGAATGAGAGCTTCCCTCAATTGGGTTTGAAGGAATCTGATTGCATTGAAACAAGCTGGCTTAGATCTGTGTTGTTTTGGGACAACATAGACATTGCTACCCCAGTTGAGATTTTGCTTGAGAGAAAGCCTCAGTCTTTGAGATACTTGAAAAGGAAATCTGACTATGTAAAGGAACCAATTTCAAAAGAGGGTTGGGAAGGGATTTGGAGGAAGATGATTGAATTGGAAAAGGGTATAATGTATTTCAATCCTTATGGTGGAAGAATGGATGAGATTTCACCAACAGCAACTCCTTTACCTCATCGTGCTGGGAACTTATGGAAGATTCAGTACCAAGCAAATTGGAATGAGGCAGGGGAAGGTGTAGCAAGTTACCACATAGATGTGATAAGAGAGCTTNACAAGTACATGACTCCTTTTGTGTCCAAGAATCCAAGACAGGCTTATCTCAATTACAAGGACCTTGATTTGGGTGTTAACCACCATGGTTTCTTTAGCAGCTACTATGAGGGAAGTGCTTATGGAACCCAATATTACAAGAATAACTTCCACAGGTTGGTTCAGATCAAGACCAAGGTTGATCCAGACAATTTCTTCAGGAGTGAACAAAGCATCCCTGTGCTTGGACATTTGGAAAGAGTGGTTAGAATGGTGACTGAGAAATCTTTGGTTTCTGTTTTGTTCTGTTTGTGTGCTAATTGGATTTGGAAGCTCTCACAAGGTCGTGTTACAAAGAAAAAAGNAAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	602388	604118	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001104.1	PF01565.18	FAD_binding_4	87	222	1.30E-25
Glyur000005s00001104.1	PF08031.7	BBE	475	533	2.30E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.021
SRR1783600	control	0.021
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.129
DRR006522	Root Winter glycyrrhizin high producing strain	0.126
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.794
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.408

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.713
SRR2868004	Drought Stress (root)	0.442
SRR2967015	Control (root)	0.188

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.540
SRR9715740	Leaf	40.083
SRR9715741	Leaf	17.023
SRR9715739	Root	0.019
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.005
SRR8749028	MeJA induced 9h	0.031
SRR8749029	MeJA induced 9h	0.008
SRR8749030	Uninduced	0.217
SRR8749031	Uninduced	1.438
SRR8749032	Uninduced	0.162

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.054
SRR8400027	Control - Root	0.064